Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0926
         (536 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    25   5.4  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    25   7.2  

>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 13/40 (32%), Positives = 25/40 (62%)
 Frame = +2

Query: 167 LFIVSCVSEFIKNNFIFKVSRI*KS*LINISYCSINILNN 286
           L + + +S+F+KN  I  ++ I  + +  I Y SI+I+N+
Sbjct: 339 LLVFAFISDFLKNRGIVLIAAISTTMIGFIVYGSIDIMNH 378


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/23 (39%), Positives = 18/23 (78%)
 Frame = +1

Query: 460 EIYIIYIVNKSYFIINFFLIDNS 528
           +I ++Y+ N+   ++NF+LI+NS
Sbjct: 867 QILVVYL-NRERTLLNFYLIENS 888


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,071,862
Number of Sequences: 5004
Number of extensions: 13704
Number of successful extensions: 30
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)