Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0925
         (493 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC977.14c |||aldo/keto reductase, unknown biological role|Schi...    30   0.16 
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    28   0.66 
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster...    27   1.2  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   2.7  
SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|c...    26   2.7  
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo...    26   3.5  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   4.7  
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    25   8.2  
SPBC23G7.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   8.2  

>SPAC977.14c |||aldo/keto reductase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 30.3 bits (65), Expect = 0.16
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -1

Query: 241 TASGMSFLKSPETASQGDVSKKHPIKAFRESI 146
           ++ G+ FL SPE A+Q  +S+KH   A  +S+
Sbjct: 112 SSRGVHFLDSPELANQCGLSRKHIFDAVEDSV 143


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
           Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 28.3 bits (60), Expect = 0.66
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 269 AQKHLFKRFLEVVKDKLPQEYEAFKTKYDP 358
           A  HL+ R  E ++ KLP+E E F  K++P
Sbjct: 123 ALNHLYDRMTEALRFKLPEEDEVF-DKHEP 151


>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 480

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = -1

Query: 265 STFAHASATASGMSFLKSPETASQGDVSKKHPIKAFRESIFPTKASISRSSFS 107
           S+F+  S+  +  ++ +SP  +S        P+  F  + FP+K +++ SS S
Sbjct: 161 SSFSMGSSEFASSTWSQSPMQSSLYVSPSSQPLDRFSPASFPSKETLTSSSLS 213


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -1

Query: 265 STFAHASATASGMSFLKSPETASQGDVSKKHPIKAFRESIFPTKASISRSSFS 107
           ST + +S+T+S +S   S  TAS    S      +   S  PT  S + SS S
Sbjct: 242 STSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSS 294


>SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +3

Query: 72  FAAVYCKETYSSENDDL-DIEALVGNIDSLKAFIGCFL 182
           F   Y K+  SS N DL ++    G   +  AFI CFL
Sbjct: 433 FHEAYLKQLTSSSNADLCNVSRAGGGCCTAAAFIKCFL 470


>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 610

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 36  KMKGFYVLCFALFAAVYCKETYS 104
           ++ G ++LC  L A V CKE +S
Sbjct: 580 RLSGHFLLCAKLGAKVRCKELFS 602


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +2

Query: 296  LEVVKDKLPQEYEAFKTKYDPQGKHFDALLSAVANS*GNQFLIFPAVLNL 445
            LE +KD +P      ++K +  GK FD  L  V  + GN   ++  VLNL
Sbjct: 2628 LEYIKDSVP------RSKRNT-GKMFDDSLELVPENLGNDLKVYFEVLNL 2670


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 108 ENDDLDIEALVGNIDSLKAFIGCFLETSPCDAVSGDF 218
           E+DDLD +  V ++D L +    FL+      +SG+F
Sbjct: 523 EDDDLDADICVKDVDRLYSIHAFFLKMKD---ISGEF 556


>SPBC23G7.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 131

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = +2

Query: 158 EGLYWMLLRNIPLRRCFRGFQKGHS*SCGRSMCKCTPAQKHL--FKRFLEVVKDKLPQEY 331
           E  +W L  +IPLRR  R  ++    +  +   +   A+K L  F+  L V +++L  E 
Sbjct: 10  ESYFWTLQESIPLRRRIREIRELQERNKNKYE-QLLQARKDLDRFRSNLNVQQEQLQNEI 68

Query: 332 EAFK 343
             FK
Sbjct: 69  LGFK 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,053,397
Number of Sequences: 5004
Number of extensions: 41826
Number of successful extensions: 151
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)