Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0925
         (493 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0117 + 14813472-14814113,14814194-14814404,14814552-148148...    31   0.66 
12_01_1010 - 10280424-10282003,10283359-10283668,10283749-102839...    30   0.88 
03_01_0458 - 3521938-3522024,3522133-3522213,3522673-3522806,352...    29   1.5  
01_01_0829 + 6471032-6471870,6472490-6472685,6472772-6472956,647...    29   2.7  
06_03_0620 - 22803769-22804867,22804959-22805311                       27   8.2  
04_02_0031 + 8874025-8874180,8882152-8882550,8882651-8882987,888...    27   8.2  

>09_04_0117 +
           14813472-14814113,14814194-14814404,14814552-14814846,
           14815059-14815448,14815528-14815605,14815692-14815926
          Length = 616

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 12/26 (46%), Positives = 19/26 (73%), Gaps = 3/26 (11%)
 Frame = +1

Query: 202 LFPGISKRTF---LKLWQKHVQMYSS 270
           L PG+S + +   +K+W+KHV+ YSS
Sbjct: 426 LIPGVSSQAYQKDIKMWKKHVKAYSS 451


>12_01_1010 -
           10280424-10282003,10283359-10283668,10283749-10283939,
           10283967-10284279
          Length = 797

 Score = 30.3 bits (65), Expect = 0.88
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = +3

Query: 183 ETSPCDAVSGDFKKDIPEAVAEACANVLQPRNIYSNVSLKSSRTSYLKNTKP 338
           E +  D   GD  + + E VAE C      R++   V L S  T  LKN+ P
Sbjct: 97  EAAKLDVAQGDILQAL-EYVAEICQRSRSSRHLVRKVGLISLITDLLKNSSP 147


>03_01_0458 -
           3521938-3522024,3522133-3522213,3522673-3522806,
           3523189-3523270,3523420-3523692,3523953-3524162,
           3524252-3524337,3525197-3525289,3526003-3526227,
           3526320-3526930,3529328-3529395,3529491-3529679,
           3529773-3529901,3530013-3532484
          Length = 1579

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 217 SKRTFLKLWQKHVQMYSSPETSIQTFP*SRQG-QATSRIRSL 339
           S  T + LW K++ M  +PE  ++ FP  R G   +S +R L
Sbjct: 184 SNMTSISLWVKNMNMGYTPEDKVRVFPIRRGGADDSSEVRLL 225


>01_01_0829 +
           6471032-6471870,6472490-6472685,6472772-6472956,
           6473206-6473539,6473629-6473833,6474927-6475033,
           6475117-6475269
          Length = 672

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 24/69 (34%), Positives = 33/69 (47%)
 Frame = -1

Query: 262 TFAHASATASGMSFLKSPETASQGDVSKKHPIKAFRESIFPTKASISRSSFSELYVSLQ* 83
           T + A A A  MS    P+T   G +S   P+     S  PT +S S SS S L VS   
Sbjct: 12  TLSDAFAAAVLMSSTDKPDTLPPGRLSPVSPLTHSSSSKLPTPSSSSGSSGS-LSVSRAP 70

Query: 82  TAANSAKHS 56
            +A +++ S
Sbjct: 71  ASALASRRS 79


>06_03_0620 - 22803769-22804867,22804959-22805311
          Length = 483

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +3

Query: 84  YCKETYSSENDDLDIEAL-VGNIDSLKAFIGCFLETS 191
           + KE  +S  D L I+ + VGN   LKA+ G F++T+
Sbjct: 103 WVKENVTSYGDKLKIKYVAVGNEPFLKAYNGSFMKTT 139


>04_02_0031 +
           8874025-8874180,8882152-8882550,8882651-8882987,
           8883234-8884060
          Length = 572

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 15/71 (21%), Positives = 34/71 (47%)
 Frame = -1

Query: 214 SPETASQGDVSKKHPIKAFRESIFPTKASISRSSFSELYVSLQ*TAANSAKHST*KPFIL 35
           SPE   Q +    H I     ++F  +A   R + S+   + +    N +   + +PFI+
Sbjct: 137 SPELQRQYEALDAHTIITGLRNMFEDQARAERFNTSKSLFACRLAEVNPSLPPSFEPFIM 196

Query: 34  NYSLQLIRKII 2
           N++++ + + +
Sbjct: 197 NFNMKNLNRTL 207


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,680,004
Number of Sequences: 37544
Number of extensions: 253993
Number of successful extensions: 699
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)