Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0925
         (493 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44898| Best HMM Match : Cation_efflux (HMM E-Value=1.1)             30   1.2  
SB_26112| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_28622| Best HMM Match : CcmD (HMM E-Value=0.55)                     29   2.8  
SB_7819| Best HMM Match : LBP_BPI_CETP_C (HMM E-Value=0.04)            28   3.6  
SB_38753| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_40807| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_53949| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08)       27   8.4  
SB_52217| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  
SB_34510| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  
SB_54674| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  
SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  

>SB_44898| Best HMM Match : Cation_efflux (HMM E-Value=1.1)
          Length = 641

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = +2

Query: 329 YEAFKTKYDPQGKHFDALLSAVANS*GNQFLIFPAV---LNLLADMNNLY 469
           +    T  DP   HFDA+ + +    G+  L F AV   LN L D + LY
Sbjct: 332 FTGLNTLLDPSMLHFDAVFTGLNTLLGSSMLYFGAVFTGLNTLLDPSMLY 381


>SB_26112| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 208

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 14/58 (24%), Positives = 26/58 (44%)
 Frame = +2

Query: 188 IPLRRCFRGFQKGHS*SCGRSMCKCTPAQKHLFKRFLEVVKDKLPQEYEAFKTKYDPQ 361
           +P  R  R F  G      + +  C P  KH  ++ L    ++  QE   ++T ++P+
Sbjct: 16  VPRHRFLRRFNSGDELERKQGLITCPPQMKHNEEKLLSAADER--QELYCYQTAHEPK 71


>SB_28622| Best HMM Match : CcmD (HMM E-Value=0.55)
          Length = 1087

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = -1

Query: 274 LGWSTFAHASATASGMSFLKSPETASQGDVSKKH---PIKAFRESIFP 140
           L W +  H SA    + F+ SPE +   ++ +K    P+K F   + P
Sbjct: 771 LTWHSVCHKSALGFWLDFIPSPENSRAWNILQKQTFLPLKTFFSGVEP 818


>SB_7819| Best HMM Match : LBP_BPI_CETP_C (HMM E-Value=0.04)
          Length = 444

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = -1

Query: 235 SGMSFLKSP---ETASQGDVSKKHPIKAFRESIFPTKASISRSSFSELYVSL 89
           +G+ ++KS     T +Q D+  K+P +  R  ++PT++    S    + VSL
Sbjct: 346 AGLVYMKSGFMNRTVTQADLYNKYPDRPVRLKVYPTQSPAISSDVGGVNVSL 397


>SB_38753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 797

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 16/47 (34%), Positives = 19/47 (40%)
 Frame = +3

Query: 195 CDAVSGDFKKDIPEAVAEACANVLQPRNIYSNVSLKSSRTSYLKNTK 335
           CDAV+G   K +P    E C   L P N         S T   K+ K
Sbjct: 642 CDAVTGKCYKCLPNVTGEHCEKCLFPSNCTRPTDNSHSGTLAAKHYK 688


>SB_40807| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 562

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
 Frame = +3

Query: 123 DIEALVGNIDSLKAFIGCFLETSPCDAVSGDFKKDIPEAVAEA-CANVL---QPRNIYSN 290
           +I  LV   ++L A      ++S C       KKD  E +  A C++V+        ++N
Sbjct: 67  EITELVDEYEALIAQKDSITQSSICRQPVSSLKKDFQELLENAYCSDVVLLYSGSRFHAN 126

Query: 291 VSLKSSRTSYLKN 329
            ++ S+R SY K+
Sbjct: 127 KAILSARCSYFKD 139


>SB_53949| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1149

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +2

Query: 308 KDKLPQEYEAFKTKYD 355
           KD  PQ+Y+A+K+KYD
Sbjct: 531 KDITPQDYQAWKSKYD 546


>SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4247

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 90   KETYSSENDDLDIEA-LVGNIDSLKAFIGCFLETSPCD 200
            ++T S E+ D  + A ++ N D LK     FLE+SP D
Sbjct: 2393 EKTSSGEDSDAPLLANIISNPDLLKVLKNTFLESSPRD 2430


>SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08)
          Length = 893

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +3

Query: 75  AAVYCKETYSSENDDLDIEALVGNIDSLKAFIGCFLETSPCDAVSG 212
           A +  KE   S     D+E    N+ SLK  +  F+E S C A SG
Sbjct: 131 ANICFKELTKSSIQKGDVEIETTNLYSLKEQVCDFVEASSCIAFSG 176


>SB_52217| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +2

Query: 311 DKLPQEYEAFKTKYDPQGKHFDALLSAVA 397
           ++L ++    K ++ P+ +HFDAL S +A
Sbjct: 11  ERLNEDLRKAKEEFTPEMRHFDALQSKIA 39


>SB_34510| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1845

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 18/56 (32%), Positives = 23/56 (41%)
 Frame = -1

Query: 220 LKSPETASQGDVSKKHPIKAFRESIFPTKASISRSSFSELYVSLQ*TAANSAKHST 53
           LKSP T       K     A R  I P+K S   SSF  +       A   ++H+T
Sbjct: 588 LKSPNTMKPRRTYKDLKAHATRTQILPSKPSTFASSFHPVASRFVEIAPRPSRHAT 643


>SB_54674| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1149

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +2

Query: 311  DKLPQEYEAFKTKYDPQGKHFDALLSAVA 397
            ++L ++    K ++ P+ +HFDAL S +A
Sbjct: 1042 ERLNEDLRKAKEEFTPEMRHFDALQSKIA 1070


>SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1712

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
 Frame = +3

Query: 222 KDIP-EAVAEACA---NVLQPRNIYSNVSLKSSRTSYLKNTKPSKLNTIPKE 365
           KDIP   + EA A   ++ + R  +++++LKS   +YL  + P KL  +  E
Sbjct: 763 KDIPLVGIKEANALDFSIEEKRIYWTDITLKSINRAYLNGSNPEKLIIVDLE 814


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,904,425
Number of Sequences: 59808
Number of extensions: 297385
Number of successful extensions: 814
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)