Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0925
(493 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81042-5|CAD44090.1| 331|Caenorhabditis elegans Hypothetical pr... 30 1.0
Z81042-4|CAB02796.1| 272|Caenorhabditis elegans Hypothetical pr... 30 1.0
Z83319-3|CAB05905.1| 74|Caenorhabditis elegans Hypothetical pr... 29 2.4
U23515-13|AAK21453.1| 823|Caenorhabditis elegans Hypothetical p... 29 2.4
AL132943-8|CAB81985.3| 453|Caenorhabditis elegans Hypothetical ... 28 4.2
AL132943-7|CAC14394.1| 589|Caenorhabditis elegans Hypothetical ... 28 4.2
AF031834-1|AAC13670.1| 589|Caenorhabditis elegans GLY4 protein. 28 4.2
Z81042-2|CAB02793.1| 458|Caenorhabditis elegans Hypothetical pr... 27 5.6
AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore ... 27 5.6
AC017117-2|AAF16617.1| 295|Caenorhabditis elegans Hypothetical ... 27 5.6
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 27 7.4
AF043697-6|AAB97554.1| 161|Caenorhabditis elegans Hypothetical ... 27 7.4
>Z81042-5|CAD44090.1| 331|Caenorhabditis elegans Hypothetical
protein C27H6.4b protein.
Length = 331
Score = 29.9 bits (64), Expect = 1.0
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Frame = +2
Query: 224 GHS*SCGRSMCKCTPAQKHLFKRFLEVV--KDKLPQEYEAFKTKYDPQGKHFDAL--LSA 391
G S S RS+ + T K + L+ + D++ + Y+A K +YD K D L L+
Sbjct: 88 GDSKSLSRSLSQTTAHSKTMSFEDLDALFGTDRVQEGYDALKKRYDAGEKSIDVLWRLAK 147
Query: 392 VANS*GNQ 415
N GN+
Sbjct: 148 FCNEIGNR 155
>Z81042-4|CAB02796.1| 272|Caenorhabditis elegans Hypothetical
protein C27H6.4a protein.
Length = 272
Score = 29.9 bits (64), Expect = 1.0
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Frame = +2
Query: 224 GHS*SCGRSMCKCTPAQKHLFKRFLEVV--KDKLPQEYEAFKTKYDPQGKHFDAL--LSA 391
G S S RS+ + T K + L+ + D++ + Y+A K +YD K D L L+
Sbjct: 29 GDSKSLSRSLSQTTAHSKTMSFEDLDALFGTDRVQEGYDALKKRYDAGEKSIDVLWRLAK 88
Query: 392 VANS*GNQ 415
N GN+
Sbjct: 89 FCNEIGNR 96
>Z83319-3|CAB05905.1| 74|Caenorhabditis elegans Hypothetical
protein T02D1.7 protein.
Length = 74
Score = 28.7 bits (61), Expect = 2.4
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +3
Query: 39 MKGFYVLCFALFAAVYCKETYSSENDDLDIEALVGNIDSLKAFIG 173
M+ ++L ++ + ++ + +D DIEAL+G D + AF+G
Sbjct: 1 MQFLHILLLSILSLIFISSVQAVPSDQ-DIEALMGLQDQVNAFLG 44
>U23515-13|AAK21453.1| 823|Caenorhabditis elegans Hypothetical
protein R144.2a protein.
Length = 823
Score = 28.7 bits (61), Expect = 2.4
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = -1
Query: 277 FLGWSTFAHASATASGMSFLKSPETASQGDVSKKHPIKAFRESIFPTKASISRSS 113
F+G ST ASA+ + + KSP T ++ KK P + + + P+ ++ SS
Sbjct: 185 FIGSSTPGAASASKTVVEKTKSPGTVNKEKQVKKEPKQDPLDKLLPSSSASKTSS 239
>AL132943-8|CAB81985.3| 453|Caenorhabditis elegans Hypothetical
protein Y116F11B.12b protein.
Length = 453
Score = 27.9 bits (59), Expect = 4.2
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Frame = +3
Query: 117 DLDIEALVG-NID-SLKAF-IGCFLETSPCDAVSGDFKKDIPEAVAEACANVLQPR-NIY 284
DLD+E G N++ S + + G LE PC V F+K P NV Q
Sbjct: 340 DLDMEVWGGENLEMSFRVWQCGGSLEIMPCSRVGHVFRKKHPYTFPGGSGNVFQKNTRRA 399
Query: 285 SNVSLKSSRTSYLKNTKPSK 344
+ V + + YLKN ++
Sbjct: 400 AEVWMDEYKAIYLKNVPSAR 419
>AL132943-7|CAC14394.1| 589|Caenorhabditis elegans Hypothetical
protein Y116F11B.12a protein.
Length = 589
Score = 27.9 bits (59), Expect = 4.2
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Frame = +3
Query: 117 DLDIEALVG-NID-SLKAF-IGCFLETSPCDAVSGDFKKDIPEAVAEACANVLQPR-NIY 284
DLD+E G N++ S + + G LE PC V F+K P NV Q
Sbjct: 340 DLDMEVWGGENLEMSFRVWQCGGSLEIMPCSRVGHVFRKKHPYTFPGGSGNVFQKNTRRA 399
Query: 285 SNVSLKSSRTSYLKNTKPSK 344
+ V + + YLKN ++
Sbjct: 400 AEVWMDEYKAIYLKNVPSAR 419
>AF031834-1|AAC13670.1| 589|Caenorhabditis elegans GLY4 protein.
Length = 589
Score = 27.9 bits (59), Expect = 4.2
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Frame = +3
Query: 117 DLDIEALVG-NID-SLKAF-IGCFLETSPCDAVSGDFKKDIPEAVAEACANVLQPR-NIY 284
DLD+E G N++ S + + G LE PC V F+K P NV Q
Sbjct: 340 DLDMEVWGGENLEMSFRVWQCGGSLEIMPCSRVGHVFRKKHPYTFPGGSGNVFQKNTRRA 399
Query: 285 SNVSLKSSRTSYLKNTKPSK 344
+ V + + YLKN ++
Sbjct: 400 AEVWMDEYKAIYLKNVPSAR 419
>Z81042-2|CAB02793.1| 458|Caenorhabditis elegans Hypothetical
protein C27H6.2 protein.
Length = 458
Score = 27.5 bits (58), Expect = 5.6
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +3
Query: 138 VGNIDSLKAFIGCFLETSPCDAVSGDFKKDIPEAVAEACANVLQPRNIYSNVSL 299
VG++ ++A G CD + +F + E V +V + ++I NVSL
Sbjct: 205 VGDVIYIEANSGIVKRVGRCDVYASEFDLEADEFVPMPKGDVRKSKDIVQNVSL 258
>AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore
complex protein protein8, isoform b protein.
Length = 1090
Score = 27.5 bits (58), Expect = 5.6
Identities = 8/35 (22%), Positives = 20/35 (57%)
Frame = +2
Query: 254 CKCTPAQKHLFKRFLEVVKDKLPQEYEAFKTKYDP 358
C +KH+F+ + ++++D + Y +T ++P
Sbjct: 950 CAGMYVEKHIFETWEDIIQDAIASSYAQRRTSFEP 984
>AC017117-2|AAF16617.1| 295|Caenorhabditis elegans Hypothetical
protein F43C11.7 protein.
Length = 295
Score = 27.5 bits (58), Expect = 5.6
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 272 QKHLFKRFLEVVKDKLPQEYEAFKTKYDPQGKHFDALLSAVA 397
+K + + + K L + E +K KYD +H+D + S+VA
Sbjct: 158 KKQVDDKIQALEKAALKKNDELYKEKYDEITRHYDRIRSSVA 199
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 27.1 bits (57), Expect = 7.4
Identities = 19/73 (26%), Positives = 34/73 (46%)
Frame = -1
Query: 265 STFAHASATASGMSFLKSPETASQGDVSKKHPIKAFRESIFPTKASISRSSFSELYVSLQ 86
S+ + +S+++S S S E+ + KKH +K + + +S S SS S S +
Sbjct: 210 SSSSSSSSSSSSSSSSSSSESEDEKHHHKKHAVKKHHKKAESSSSSSSSSSSSSSSSSSE 269
Query: 85 *TAANSAKHST*K 47
+ KH+ K
Sbjct: 270 DEKHHHKKHAAKK 282
>AF043697-6|AAB97554.1| 161|Caenorhabditis elegans Hypothetical
protein F56C11.3 protein.
Length = 161
Score = 27.1 bits (57), Expect = 7.4
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +3
Query: 150 DSLKAFIGCFLETSPCDAVSGDFKKDIPEA 239
D ++F+ +T PCD + D +KD+ E+
Sbjct: 82 DRARSFMSILGKTYPCDFCAKDLRKDLKES 111
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,186,836
Number of Sequences: 27780
Number of extensions: 227041
Number of successful extensions: 703
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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