Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0925
         (493 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11720.1 68416.m01437 expressed protein                             31   0.32 
At5g67385.1 68418.m08497 phototropic-responsive protein, putativ...    29   1.3  
At4g33220.1 68417.m04729 pectinesterase family protein contains ...    27   6.9  
At1g05890.1 68414.m00617 zinc finger protein-related contains lo...    27   6.9  

>At3g11720.1 68416.m01437 expressed protein
          Length = 542

 Score = 31.5 bits (68), Expect = 0.32
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = +3

Query: 183 ETSPCDAVSGDFKKDIPEAVAEACANVLQPRNIYSNVSLKSSRTSYLKNTKPSK 344
           ET  C+  S   K+D+PE   E C + L+  N  S  S  SS +S     K  K
Sbjct: 333 ETRDCENESVPCKRDVPEIEEEECVDDLKEENKSSPSSSSSSSSSSEDEDKNGK 386


>At5g67385.1 68418.m08497 phototropic-responsive protein, putative
           similar to root phototropism RPT2 [Arabidopsis thaliana]
           gi|6959488|gb|AAF33112, a signal transducer of
           phototropic response PMID:10662859
          Length = 663

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = +2

Query: 191 PLRRCFRGFQKGHS*SCGRSMCKCTPAQKHLFKRFLEVVKDKLPQEYEAFKTKY 352
           PL+ CF   Q       G+ M K  P Q+H  +  LE +   LP+E  A    +
Sbjct: 278 PLKVCFVSLQMQEI--FGKGMKKIEPKQEHEKRVILETIVSLLPREKNAMSVSF 329


>At4g33220.1 68417.m04729 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 404

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = -1

Query: 271 GWSTFAHASATASGMSFLKSPETASQGDVSKKHPIKAFR 155
           GW+TF  A+   SG  FL    T       +KH   A R
Sbjct: 163 GWTTFRSATFAVSGRGFLARDITFQNTAGPEKHQAVALR 201


>At1g05890.1 68414.m00617 zinc finger protein-related contains low
           similarity to zinc finger proteins and Pfam PF01485: IBR
           domain
          Length = 552

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +2

Query: 155 SEGLYWMLLRNIPLRRCFRGFQKGHS*SCGRSMCKCTPAQKHLF 286
           SE + W+L  + P  +C R  +K H    G     CTP  K  F
Sbjct: 277 SENMNWILANSKPCPKCKRPIEKNH----GCMHMTCTPPCKFEF 316


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,523,829
Number of Sequences: 28952
Number of extensions: 215128
Number of successful extensions: 700
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)