Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0922
(764 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_A3FMR3 Cluster: Pol-like protein; n=2; Biomphalaria gla... 60 4e-08
UniRef50_Q9U4W1 Cluster: Pol-like protein; n=1; Aedes aegypti|Re... 51 4e-05
UniRef50_UPI0000D57951 Cluster: PREDICTED: similar to RNA-direct... 46 0.001
UniRef50_Q1ZBI5 Cluster: Putative uncharacterized protein; n=1; ... 46 0.001
UniRef50_Q8MY33 Cluster: Reverse transcriptase; n=9; Obtectomera... 45 0.002
UniRef50_Q868Q6 Cluster: Reverse transcriptase; n=3; Anopheles g... 45 0.002
UniRef50_Q868Q4 Cluster: Reverse transcriptase; n=3; Bombyx mori... 44 0.005
UniRef50_Q9GP60 Cluster: Pol protein; n=1; Drosophila melanogast... 43 0.010
UniRef50_Q868S2 Cluster: Reverse transcriptase; n=4; Anopheles g... 43 0.010
UniRef50_UPI00015B42A6 Cluster: PREDICTED: similar to polyprotei... 42 0.013
UniRef50_Q868R0 Cluster: Reverse transcriptase; n=1; Anopheles g... 42 0.013
UniRef50_Q5KTM6 Cluster: Reverse transcriptase; n=1; Bombyx mori... 41 0.029
UniRef50_UPI0000D578E3 Cluster: PREDICTED: similar to Hypothetic... 40 0.051
UniRef50_Q24363 Cluster: Putative ORF2; n=2; melanogaster subgro... 40 0.068
UniRef50_Q961V7 Cluster: GH03753p; n=5; melanogaster subgroup|Re... 40 0.089
UniRef50_UPI0000D5776D Cluster: PREDICTED: similar to Hypothetic... 39 0.12
UniRef50_UPI0000D57919 Cluster: PREDICTED: hypothetical protein,... 38 0.27
UniRef50_Q7MWB2 Cluster: Sensor protein; n=1; Porphyromonas ging... 38 0.36
UniRef50_O46184 Cluster: Reverse transcriptase; n=2; Drosophila ... 38 0.36
UniRef50_Q9NBX4 Cluster: Probable RNA-directed DNA polymerase fr... 38 0.36
UniRef50_Q868S4 Cluster: Reverse transcriptase; n=1; Anopheles g... 37 0.48
UniRef50_Q868S6 Cluster: Reverse transcriptase; n=2; Culicidae|R... 37 0.63
UniRef50_A5K1V1 Cluster: Putative uncharacterized protein; n=3; ... 37 0.63
UniRef50_UPI0000D57891 Cluster: PREDICTED: similar to Hypothetic... 36 0.83
UniRef50_Q6J4U7 Cluster: Pol protein; n=9; cellular organisms|Re... 36 1.1
UniRef50_Q9N9Z1 Cluster: Endonuclease/reverse transcriptase; n=1... 36 1.5
UniRef50_UPI00015B43EC Cluster: PREDICTED: similar to pol-like p... 35 1.9
UniRef50_Q9TYX8 Cluster: Putative uncharacterized protein R11E3.... 35 1.9
UniRef50_Q07995 Cluster: Reverse transcriptase homolog protein; ... 34 3.4
UniRef50_UPI00015B4771 Cluster: PREDICTED: similar to secreted p... 34 4.4
UniRef50_P21328 Cluster: RNA-directed DNA polymerase from mobile... 34 4.4
UniRef50_Q95SX7 Cluster: Probable RNA-directed DNA polymerase fr... 34 4.4
UniRef50_A4AWY0 Cluster: MdlB protein; n=2; Proteobacteria|Rep: ... 33 5.9
>UniRef50_A3FMR3 Cluster: Pol-like protein; n=2; Biomphalaria
glabrata|Rep: Pol-like protein - Biomphalaria glabrata
(Bloodfluke planorb)
Length = 1222
Score = 60.5 bits (140), Expect = 4e-08
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Frame = +3
Query: 33 HLTILC--VYCPPSNGSFRISKLRNIIRDLPKPIYVAGDFNAHHVAFGCMTTKSRGHQLY 206
H I C +Y PP R + + ++++ LP+P + GDFNAH+ +G T +RG L
Sbjct: 94 HKVITCCSLYLPPGAPLNR-TDMEDLLKQLPRPYLILGDFNAHNTMWGSNNTDTRGRMLE 152
Query: 207 DLIDEFDLCVLNNGS 251
D+ + DLC+LN+ S
Sbjct: 153 DIFLQHDLCILNDAS 167
>UniRef50_Q9U4W1 Cluster: Pol-like protein; n=1; Aedes aegypti|Rep:
Pol-like protein - Aedes aegypti (Yellowfever mosquito)
Length = 1208
Score = 50.8 bits (116), Expect = 4e-05
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Frame = +3
Query: 36 LTILCVYCPPSNGSFRISKLR--NIIRDLPKPIYVAGDFNAHHVAFGCMTTKSRGHQLYD 209
+T++ Y P NG+ KLR N ++ L PI V D N HH +G ++ RG + D
Sbjct: 103 MTVISGYLP--NGNIPDLKLRLFNALQSLSSPILVMWDVNGHHPEWGSVSPNDRGSLIMD 160
Query: 210 LIDEFDLCVLNNGS 251
+ ++ DL +LN+G+
Sbjct: 161 VAEKLDLVILNDGA 174
Score = 40.7 bits (91), Expect = 0.039
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Frame = +2
Query: 257 TINYPNRNPSAIDVSFCSAPITPLCEWWVHDDSMGSYHFPTLTRVLLSVDRY-QINPPIE 433
T RN SAIDVS CS I W +D MGS H P + + +D Q
Sbjct: 176 TFTRGQRN-SAIDVSLCSPSIVNRLLWTAKEDPMGSDHHP----IFIHIDEQPQATSRRP 230
Query: 434 KFLYNKTDWTKYNELSLTAFSN 499
++ Y++ DW+ + L T S+
Sbjct: 231 RWKYDQADWSHFQTLIDTEVSD 252
>UniRef50_UPI0000D57951 Cluster: PREDICTED: similar to RNA-directed
DNA polymerase from mobile element jockey (Reverse
transcriptase); n=2; Tribolium castaneum|Rep: PREDICTED:
similar to RNA-directed DNA polymerase from mobile
element jockey (Reverse transcriptase) - Tribolium
castaneum
Length = 971
Score = 45.6 bits (103), Expect = 0.001
Identities = 28/83 (33%), Positives = 36/83 (43%)
Frame = +3
Query: 3 VALSLYVSGNHLTILCVYCPPSNGSFRISKLRNIIRDLPKPIYVAGDFNAHHVAFGCMTT 182
+A+ Y+ N +T Y P ++L LPK I + GDFNA H FG T
Sbjct: 95 IAVDTYIDSNIITFFTYYNSPRQ--CLSNELMQYAASLPKAI-ILGDFNARHTDFGDTLT 151
Query: 183 KSRGHQLYDLIDEFDLCVLNNGS 251
GH L D I L + N S
Sbjct: 152 NRNGHILIDAISNLPLYRIPNSS 174
>UniRef50_Q1ZBI5 Cluster: Putative uncharacterized protein; n=1;
Psychromonas sp. CNPT3|Rep: Putative uncharacterized
protein - Psychromonas sp. CNPT3
Length = 161
Score = 45.6 bits (103), Expect = 0.001
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Frame = +3
Query: 3 VALSLYVSGNHLTILCVYCPP--SNGSFRISKLR----NIIRDLPKPIYVAGDFNAHHVA 164
VA + H+TI VY PP +N +I K + N+ LP P+ + GDFN+H V
Sbjct: 76 VAKQARIGDLHVTIASVYIPPIANNEKEKIEKFKEDLGNLAVVLPGPLLILGDFNSHGVE 135
Query: 165 FGCMTTKSRGHQLYDLIDEFDLCVLN 242
+G + R + D D + +LN
Sbjct: 136 WGGVKDDIRAPIIRDFCDWYKFSILN 161
>UniRef50_Q8MY33 Cluster: Reverse transcriptase; n=9;
Obtectomera|Rep: Reverse transcriptase - Papilio xuthus
Length = 1053
Score = 45.2 bits (102), Expect = 0.002
Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Frame = +3
Query: 42 ILCVYCPPSNGSFRISKLRNII-----RDLPKPIYVAGDFNAHHVAFGCMTTKSRGHQLY 206
++ VYC PS L + R+LP + V GDFNA A+G +T +RG L
Sbjct: 86 VVGVYCAPSMNLVEFEDLLERVGTLVGRNLPHSVLVMGDFNAKSSAWGSTSTNARGAVLE 145
Query: 207 DLIDEFDLCVLNNGS 251
+ LC+LN GS
Sbjct: 146 EWALTSGLCLLNRGS 160
>UniRef50_Q868Q6 Cluster: Reverse transcriptase; n=3; Anopheles
gambiae|Rep: Reverse transcriptase - Anopheles gambiae
(African malaria mosquito)
Length = 1248
Score = 45.2 bits (102), Expect = 0.002
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Frame = +3
Query: 30 NHLTILCVYCPPSNGSFRISKLRN----IIRDLPKPIYVAGDFNAHHVAFGCMTTKSRGH 197
N +TI+ Y P+ G + ++ +IR P+ + +AGDFNA H A+G TK +G
Sbjct: 81 NGITIVYYYVKPNVGVRQFEEIMERIDILIRGHPR-VLLAGDFNAWHTAWGSERTKPKGI 139
Query: 198 QLYDLIDEFDLCVLNNGS 251
L L++ L VLN G+
Sbjct: 140 ALLQLVNGLGLEVLNIGT 157
>UniRef50_Q868Q4 Cluster: Reverse transcriptase; n=3; Bombyx
mori|Rep: Reverse transcriptase - Bombyx mori (Silk
moth)
Length = 1076
Score = 43.6 bits (98), Expect = 0.005
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Frame = +3
Query: 33 HLTILCVYCPPSNGSFRISK----LRNIIRDL-PKPIYVAGDFNAHHVAFGCMTTKSRGH 197
++ ++ VY P+ + + L I R L P+ + +AGDFNA VA+G T +RG
Sbjct: 86 NIVVIGVYFSPNRPTVEFERFLDGLEVIARHLAPRSVILAGDFNAKSVAWGSPFTDARGR 145
Query: 198 QLYDLIDEFDLCVLNNGS 251
L + LC++N GS
Sbjct: 146 LLEEWAVAVGLCIVNRGS 163
>UniRef50_Q9GP60 Cluster: Pol protein; n=1; Drosophila
melanogaster|Rep: Pol protein - Drosophila melanogaster
(Fruit fly)
Length = 1227
Score = 42.7 bits (96), Expect = 0.010
Identities = 20/62 (32%), Positives = 34/62 (54%)
Frame = +2
Query: 290 IDVSFCSAPITPLCEWWVHDDSMGSYHFPTLTRVLLSVDRYQINPPIEKFLYNKTDWTKY 469
ID+S S I +C W + D+ GS HFP +T + + R P+ K+ ++ +W ++
Sbjct: 184 IDISLISPQIAHMCSWSISDNLHGSDHFP-ITIHINTPTRPDNTLPLPKYKTDQANWKRF 242
Query: 470 NE 475
NE
Sbjct: 243 NE 244
Score = 40.3 bits (90), Expect = 0.051
Identities = 24/72 (33%), Positives = 38/72 (52%)
Frame = +3
Query: 36 LTILCVYCPPSNGSFRISKLRNIIRDLPKPIYVAGDFNAHHVAFGCMTTKSRGHQLYDLI 215
+ I+ Y PPS F S + I+++L + GD N+ +G T +RG ++ +I
Sbjct: 101 INIVNAYIPPSQ-IFSSSDISEILQNLNGSTILLGDLNSWSPLWGSPRTNTRGKKIETVI 159
Query: 216 DEFDLCVLNNGS 251
E L VLN+GS
Sbjct: 160 LENSLIVLNDGS 171
>UniRef50_Q868S2 Cluster: Reverse transcriptase; n=4; Anopheles
gambiae|Rep: Reverse transcriptase - Anopheles gambiae
(African malaria mosquito)
Length = 1201
Score = 42.7 bits (96), Expect = 0.010
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = +3
Query: 36 LTILCVYCPPSNGSFRISKLRNIIR---DLPKPIYVAGDFNAHHVAFGCMTTKSRGHQLY 206
+T + VY PPS + +L I + VAGDFNA H +G RG +L
Sbjct: 148 ITFISVYAPPSLSAHEFERLLGAIELEAASHSRVVVAGDFNAWHEEWGSGRNGQRGIELL 207
Query: 207 DLIDEFDLCVLNNG 248
++ L +LN G
Sbjct: 208 QTVETLGLSILNQG 221
>UniRef50_UPI00015B42A6 Cluster: PREDICTED: similar to polyprotein;
n=1; Nasonia vitripennis|Rep: PREDICTED: similar to
polyprotein - Nasonia vitripennis
Length = 1249
Score = 42.3 bits (95), Expect = 0.013
Identities = 20/78 (25%), Positives = 38/78 (48%)
Frame = +3
Query: 3 VALSLYVSGNHLTILCVYCPPSNGSFRISKLRNIIRDLPKPIYVAGDFNAHHVAFGCMTT 182
V + ++ + ++ Y PP N + S L ++ + P +AGD NA H ++GC+
Sbjct: 433 VGVEIHTKSTPIRVIAFYAPP-NPKEKFSSLHSLF-NTNIPTILAGDLNAKHTSWGCIHN 490
Query: 183 KSRGHQLYDLIDEFDLCV 236
G L I + ++C+
Sbjct: 491 NPAGQSLLKKIMKHNICI 508
>UniRef50_Q868R0 Cluster: Reverse transcriptase; n=1; Anopheles
gambiae|Rep: Reverse transcriptase - Anopheles gambiae
(African malaria mosquito)
Length = 1173
Score = 42.3 bits (95), Expect = 0.013
Identities = 17/42 (40%), Positives = 27/42 (64%)
Frame = +3
Query: 126 IYVAGDFNAHHVAFGCMTTKSRGHQLYDLIDEFDLCVLNNGS 251
+ + GDFNA H A+G TK +G +L + +++ L VLN G+
Sbjct: 116 VVLGGDFNAWHEAWGSARTKRKGEELLNTVEQLGLIVLNRGN 157
>UniRef50_Q5KTM6 Cluster: Reverse transcriptase; n=1; Bombyx
mori|Rep: Reverse transcriptase - Bombyx mori (Silk
moth)
Length = 185
Score = 41.1 bits (92), Expect = 0.029
Identities = 17/38 (44%), Positives = 26/38 (68%)
Frame = +1
Query: 619 PAPWWSDTCEQSVIKTYEALKLYRRHPTIDNYINYKKL 732
P+PW SD+ ++ + + +A + YR+ PT DN I YKKL
Sbjct: 42 PSPWLSDSIKRMMARRDKAKRRYRKLPTEDNLITYKKL 79
>UniRef50_UPI0000D578E3 Cluster: PREDICTED: similar to Hypothetical
115 kDa protein in type I retrotransposable element R1DM
(ORF 2); n=2; Tribolium castaneum|Rep: PREDICTED:
similar to Hypothetical 115 kDa protein in type I
retrotransposable element R1DM (ORF 2) - Tribolium
castaneum
Length = 1208
Score = 40.3 bits (90), Expect = 0.051
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Frame = +3
Query: 15 LYVSGNHLTILCVYCPPSNGSFRISKLRNIIRDLPKP----IYVAGDFNAHHVAFGCMTT 182
+++ ++TI Y P++ +K + IRD K I + GDFNA A+G T
Sbjct: 58 VWIQNENITIYSCYLSPNSTIEEYTKTLDDIRDSTKHQQTHIIITGDFNAKSTAWGMPQT 117
Query: 183 KSRGHQLYDLIDEFDLCVLNNGSF 254
+RG L D I E + N ++
Sbjct: 118 DARGSILNDWIAELNFITKNKPNY 141
>UniRef50_Q24363 Cluster: Putative ORF2; n=2; melanogaster
subgroup|Rep: Putative ORF2 - Drosophila melanogaster
(Fruit fly)
Length = 1219
Score = 39.9 bits (89), Expect = 0.068
Identities = 18/64 (28%), Positives = 34/64 (53%)
Frame = +2
Query: 290 IDVSFCSAPITPLCEWWVHDDSMGSYHFPTLTRVLLSVDRYQINPPIEKFLYNKTDWTKY 469
ID++ CS + P +W + +D GS HFP +T + + + + P F + +W ++
Sbjct: 180 IDLTLCSPILAPHAKWKILNDLHGSDHFPIITTLFPTTNPQKFYRPF--FKLKEANWEQF 237
Query: 470 NELS 481
N L+
Sbjct: 238 NALT 241
Score = 38.7 bits (86), Expect = 0.16
Identities = 23/72 (31%), Positives = 30/72 (41%)
Frame = +3
Query: 36 LTILCVYCPPSNGSFRISKLRNIIRDLPKPIYVAGDFNAHHVAFGCMTTKSRGHQLYDLI 215
L I Y P+ + L N P + GDFN H +G TT RG + I
Sbjct: 97 LNIFSTYISPTK-NITNQTLHNTFNIQQTPSLITGDFNGWHHPWGSPTTNKRGKITHRFI 155
Query: 216 DEFDLCVLNNGS 251
D L +LN+ S
Sbjct: 156 DNMHLILLNDKS 167
>UniRef50_Q961V7 Cluster: GH03753p; n=5; melanogaster subgroup|Rep:
GH03753p - Drosophila melanogaster (Fruit fly)
Length = 888
Score = 39.5 bits (88), Expect = 0.089
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = +3
Query: 6 ALSLYVSGNHLTILCVYCPPSNGSFRISK--LRNIIRDLPKPIYVAGDFNAHHVAFGCMT 179
+++L ++ T+ VYCPP F IS+ L AGD+NA H +G
Sbjct: 92 SIALQLNNGSTTLAAVYCPPR---FPISEDQFMEFFNTLGDRFIAAGDYNAKHTHWGSRL 148
Query: 180 TKSRGHQLYDLI 215
+G QLY+ +
Sbjct: 149 VTPKGKQLYNAL 160
>UniRef50_UPI0000D5776D Cluster: PREDICTED: similar to Hypothetical
115 kDa protein in type I retrotransposable element R1DM
(ORF 2); n=1; Tribolium castaneum|Rep: PREDICTED:
similar to Hypothetical 115 kDa protein in type I
retrotransposable element R1DM (ORF 2) - Tribolium
castaneum
Length = 973
Score = 39.1 bits (87), Expect = 0.12
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = +3
Query: 132 VAGDFNAHHVAFGCMTTKSRGHQLYDLIDEFDLCVLNNGS 251
V GDFNA +G ++ RG +L DLI E ++ VLN G+
Sbjct: 112 VTGDFNAKSYLWGNVSEDKRGKELADLIGELEMWVLNQGN 151
>UniRef50_UPI0000D57919 Cluster: PREDICTED: hypothetical protein,
partial; n=2; Tribolium castaneum|Rep: PREDICTED:
hypothetical protein, partial - Tribolium castaneum
Length = 263
Score = 37.9 bits (84), Expect = 0.27
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Frame = +3
Query: 3 VALSLYVSGNHLTILCVYCPP-SNGSFRISKLRNIIRDLPKPIYVAGDFNAHHVAFGCMT 179
VA +++++ ++ +C Y PP S ++ + R + GDFNA H FG
Sbjct: 90 VAATIHINNLNILFICYYNPPLETVSTQLLDYTSTFRHA----VILGDFNARHTDFGDTI 145
Query: 180 TKSRGHQLYDLIDEFDLCVLNN 245
+ + G L ++ LC L N
Sbjct: 146 SNTNGRHLTRSLNTLPLCRLRN 167
>UniRef50_Q7MWB2 Cluster: Sensor protein; n=1; Porphyromonas
gingivalis|Rep: Sensor protein - Porphyromonas
gingivalis (Bacteroides gingivalis)
Length = 427
Score = 37.5 bits (83), Expect = 0.36
Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 14/122 (11%)
Frame = +2
Query: 362 SYHFPTLTRVLLSVDRYQINPPIEKFLYNKTDWTKYNELS----LTAFSNFEVIMR---- 517
S F L R++ +DR+++N P+++ + KTD T++ +LS TA N EV +
Sbjct: 161 SRSFRPLYRLIGWIDRFRVNEPVQELVMAKTDVTEFRKLSEAMLRTAHHNVEVFEQQKEF 220
Query: 518 -IHYSH--MTNLSKGLIHLRGILCQ-SLSKQ--ITIVANLQHLGGVTHVNRVLLKLMKL* 679
H SH T L+ L +L SL++Q I +Q + + +N+ LL K+
Sbjct: 221 ISHASHELQTPLAISRNKLEMLLQDPSLNEQQLEQIYKAIQSINHIVQLNKTLLLYSKIE 280
Query: 680 NY 685
N+
Sbjct: 281 NH 282
>UniRef50_O46184 Cluster: Reverse transcriptase; n=2; Drosophila
subobscura|Rep: Reverse transcriptase - Drosophila
subobscura (Fruit fly)
Length = 554
Score = 37.5 bits (83), Expect = 0.36
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
Frame = +3
Query: 6 ALSLYVSGNHLTILCVYCPPSNGSFRISKLRNIIRDLPKP---IYVAGDFNAHHVAFGCM 176
A SL + G L ++ Y +R I+ D + + + D NAHH +G
Sbjct: 96 AASLELQGTRLNLVSSYMAHEESDPPSDLVRKIVSDSERSDTSLLIGCDANAHHTQWGSS 155
Query: 177 TTKSRGHQLYDLIDEFDLCVLNNGSFLLLII 269
T RG L+ I +L + N G+ II
Sbjct: 156 DTNVRGESLFSFILNSNLFIGNRGNDPTFII 186
>UniRef50_Q9NBX4 Cluster: Probable RNA-directed DNA polymerase from
transposon X-element; n=1; Drosophila melanogaster|Rep:
Probable RNA-directed DNA polymerase from transposon
X-element - Drosophila melanogaster (Fruit fly)
Length = 908
Score = 37.5 bits (83), Expect = 0.36
Identities = 18/55 (32%), Positives = 30/55 (54%)
Frame = +3
Query: 51 VYCPPSNGSFRISKLRNIIRDLPKPIYVAGDFNAHHVAFGCMTTKSRGHQLYDLI 215
VYCPP ++ + ++I+ + VAGD+NA H +G + RG L +L+
Sbjct: 108 VYCPP-RFAWTTDEFKDILEEFQTKFIVAGDWNASHWLWGAGRSNQRGIALANLV 161
>UniRef50_Q868S4 Cluster: Reverse transcriptase; n=1; Anopheles
gambiae|Rep: Reverse transcriptase - Anopheles gambiae
(African malaria mosquito)
Length = 973
Score = 37.1 bits (82), Expect = 0.48
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Frame = +3
Query: 30 NHLTILCVYCPPSNGSFRISKLRNIIRDLP---KPIYVAGDFNAHHVAFGCMTTKSRGHQ 200
N +T Y PP + ++ I D PI ++GDFNA +G +T +RG+
Sbjct: 80 NKITFCSCYAPPRWDLEKFEEMLKRISDEVYDVNPIIISGDFNAWATEWGSKSTNARGNA 139
Query: 201 LYDLIDEFDLCVLNNG 248
+ + +L ++N G
Sbjct: 140 VLEHFSRLNLVLVNVG 155
>UniRef50_Q868S6 Cluster: Reverse transcriptase; n=2; Culicidae|Rep:
Reverse transcriptase - Anopheles gambiae (African
malaria mosquito)
Length = 1049
Score = 36.7 bits (81), Expect = 0.63
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Frame = +3
Query: 54 YCPPSNGSFRIS-KLRNIIRDLP--KPIYVAGDFNAHHVAFGCMTTKSRGHQLYDLIDEF 224
Y PPS R L N++ +L +P+ +AGDFNA V +G T SRG + +
Sbjct: 86 YAPPSWELERFHVMLDNLVAELDGHRPLVIAGDFNAWAVEWGSKRTNSRGDAVLESFARL 145
Query: 225 DLCVLNNGS 251
+ + N G+
Sbjct: 146 GVTLGNAGT 154
>UniRef50_A5K1V1 Cluster: Putative uncharacterized protein; n=3;
Plasmodium|Rep: Putative uncharacterized protein -
Plasmodium vivax
Length = 290
Score = 36.7 bits (81), Expect = 0.63
Identities = 28/102 (27%), Positives = 45/102 (44%)
Frame = +3
Query: 174 MTTKSRGHQLYDLIDEFDLCVLNNGSFLLLIILTEIHRLLMSVFVVLQSLHYANGGCMMI 353
+ +K + LYD + + N F+LLI+L+ I+ + F + G + I
Sbjct: 81 LNSKGKIKILYDSLISYK----NEHGFILLILLSLIY-IFYQAFPLFLWWMTGTGSIITI 135
Query: 354 LWGAIIFLRLLVFYCPLIDTKLILPLKNSYTTRQTGRNTMSY 479
L GA +FYC L+ T I PL + + GR + Y
Sbjct: 136 LIGAFYNYAFSIFYCSLLST--ISPLVTYFIFKNYGRTVIEY 175
>UniRef50_UPI0000D57891 Cluster: PREDICTED: similar to Hypothetical
115 kDa protein in type I retrotransposable element R1DM
(ORF 2), partial; n=1; Tribolium castaneum|Rep:
PREDICTED: similar to Hypothetical 115 kDa protein in
type I retrotransposable element R1DM (ORF 2), partial -
Tribolium castaneum
Length = 2033
Score = 36.3 bits (80), Expect = 0.83
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Frame = +3
Query: 18 YVSGNHLTILCVYCPPSN--GSFR--ISKLRNIIRDLPKPIYVAGDFNAHHVAFGCMTTK 185
++S + +T+ Y P++ G F + L ++ P+ V GDFNA +G +
Sbjct: 726 WISTSVVTVYSCYISPNSTIGEFINVLESLTTSMQTQSDPVIVTGDFNAKSTEWGMPYSD 785
Query: 186 SRGHQLYDLIDEFDLCVLN 242
RG L D I + DL +N
Sbjct: 786 RRGSLLADWIAQHDLTAVN 804
>UniRef50_Q6J4U7 Cluster: Pol protein; n=9; cellular organisms|Rep:
Pol protein - Drosophila melanogaster (Fruit fly)
Length = 1092
Score = 35.9 bits (79), Expect = 1.1
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Frame = +3
Query: 36 LTILCVYCPPSNGSFRISKLRNIIRDLPKP------IYVAGDFNAHHVAFGCMTTKSRGH 197
+ I VYCPPS S+ +++ K + + GD+NA H +GC+ RG
Sbjct: 125 IVIASVYCPPSL-SWSPHHFTDVLNFAEKTMGGQTKLILCGDWNAKHRQWGCIRACQRGA 183
Query: 198 QLYDLI 215
LYD I
Sbjct: 184 ALYDAI 189
>UniRef50_Q9N9Z1 Cluster: Endonuclease/reverse transcriptase; n=1;
Drosophila melanogaster|Rep: Endonuclease/reverse
transcriptase - Drosophila melanogaster (Fruit fly)
Length = 989
Score = 35.5 bits (78), Expect = 1.5
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Frame = +3
Query: 54 YCPPSNGSFRISK-LRNIIRDLP--KPIYVAGDFNAHHVAFGCMTTKSRGHQLYDLIDEF 224
Y PPS+ + L ++ +P + GD NA +G + +RG + D ++
Sbjct: 93 YAPPSDSPEQFEDMLEKLVNHASGRRPTVIGGDLNAWATEWGSRISNTRGRAVIDAMNLL 152
Query: 225 DLCVLNNG 248
DL +LN+G
Sbjct: 153 DLVLLNDG 160
>UniRef50_UPI00015B43EC Cluster: PREDICTED: similar to pol-like
protein; n=1; Nasonia vitripennis|Rep: PREDICTED:
similar to pol-like protein - Nasonia vitripennis
Length = 1119
Score = 35.1 bits (77), Expect = 1.9
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +3
Query: 120 KPIYVAGDFNAHHVAFGCMTTKSRGHQLYDLIDEFDLCVLNNGS 251
K +AGDFNAHH +G G + + +D+ + +LNN S
Sbjct: 120 KHFILAGDFNAHHSVWGSSKECCNGKVIVENLDQGNFILLNNQS 163
>UniRef50_Q9TYX8 Cluster: Putative uncharacterized protein R11E3.3;
n=1; Caenorhabditis elegans|Rep: Putative
uncharacterized protein R11E3.3 - Caenorhabditis elegans
Length = 931
Score = 35.1 bits (77), Expect = 1.9
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Frame = +3
Query: 51 VYCPPSNGSFRISKLR----NIIRDLPKPIYVAGDFNAHHVAFGCMTTK-SRGHQLYDLI 215
VY PP + S ++L NI + K I ++GD NAHH A+ ++ +RG +L +LI
Sbjct: 6 VYVPPRSSSSNHARLMTDFSNIFQTKSKSI-ISGDVNAHHSAWHSEGSEDTRGRELAELI 64
Query: 216 D-EFDLCVLN 242
D DL + N
Sbjct: 65 DLHPDLIIQN 74
>UniRef50_Q07995 Cluster: Reverse transcriptase homolog protein;
n=80; Culicimorpha|Rep: Reverse transcriptase homolog
protein - Chironomus thummi
Length = 883
Score = 34.3 bits (75), Expect = 3.4
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Frame = +3
Query: 42 ILCVYCPPSNGSFRIS-KLR---NIIRDLPKPIYVAGDFNAHHVAFGCMTTKSRGHQLYD 209
IL VY P + I LR N I +L Y+ GDFNA H + C G+ L +
Sbjct: 109 ILSVYLPRGSKGGEIDLHLRDDINKITNLRGNYYICGDFNAKHREWNCNVANKSGNILQE 168
Query: 210 LIDEF 224
+ EF
Sbjct: 169 MSGEF 173
>UniRef50_UPI00015B4771 Cluster: PREDICTED: similar to secreted
protein; n=1; Nasonia vitripennis|Rep: PREDICTED:
similar to secreted protein - Nasonia vitripennis
Length = 1163
Score = 33.9 bits (74), Expect = 4.4
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +1
Query: 628 WWSDTCEQSVIKTYEALKLYRRHPTIDNYINYKKLDAVKKKTISE 762
WW +C V + EAL ++ P+ +N NY K+ +++++
Sbjct: 443 WWDKSCSALVDERREALSKFKSDPSPENIANYYKISRSSSRSLNK 487
>UniRef50_P21328 Cluster: RNA-directed DNA polymerase from mobile
element jockey; n=4; Drosophiliti|Rep: RNA-directed DNA
polymerase from mobile element jockey - Drosophila
melanogaster (Fruit fly)
Length = 916
Score = 33.9 bits (74), Expect = 4.4
Identities = 21/78 (26%), Positives = 34/78 (43%)
Frame = +3
Query: 15 LYVSGNHLTILCVYCPPSNGSFRISKLRNIIRDLPKPIYVAGDFNAHHVAFGCMTTKSRG 194
L S +T+ VY PP+ + + +++ L GD+NA H +G + RG
Sbjct: 97 LQTSVGTVTVAAVYLPPAE-RWIVDDFKSMFAALGNKFIAGGDYNAKHAWWGNPRSCPRG 155
Query: 195 HQLYDLIDEFDLCVLNNG 248
L ++I VL G
Sbjct: 156 KMLQEVIAHGQYQVLATG 173
>UniRef50_Q95SX7 Cluster: Probable RNA-directed DNA polymerase from
transposon BS; n=7; melanogaster subgroup|Rep: Probable
RNA-directed DNA polymerase from transposon BS -
Drosophila melanogaster (Fruit fly)
Length = 906
Score = 33.9 bits (74), Expect = 4.4
Identities = 21/72 (29%), Positives = 30/72 (41%)
Frame = +3
Query: 36 LTILCVYCPPSNGSFRISKLRNIIRDLPKPIYVAGDFNAHHVAFGCMTTKSRGHQLYDLI 215
L +YC PS +IIR + V GD+NA H +G RG +L + +
Sbjct: 104 LQFSAIYCSPST-RIEERHFTDIIRACGQRYLVGGDWNARHWLWGDTCNSPRGRELAEAL 162
Query: 216 DEFDLCVLNNGS 251
+L GS
Sbjct: 163 SVTGAKILATGS 174
>UniRef50_A4AWY0 Cluster: MdlB protein; n=2; Proteobacteria|Rep:
MdlB protein - Alteromonas macleodii 'Deep ecotype'
Length = 563
Score = 33.5 bits (73), Expect = 5.9
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Frame = -2
Query: 430 NGRINLVSINGQ*NTSKRRKMIAPHRIIMHPPFA*WSDWSTTKTDINSRWISVRIIN--- 260
NG ++ +GQ + + + IA R++++PP D T D+ SR + +++
Sbjct: 476 NGLDTVIGEHGQGLSGGQMQRIALARVLLNPPELILLDEPTASLDLKSRLVITGVLDELK 535
Query: 259 SRKLPLLRTHRSNSSIKSYN 200
SR L ++ TH S+ K+ N
Sbjct: 536 SRALVVVATHDSDLIAKTSN 555
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 728,418,842
Number of Sequences: 1657284
Number of extensions: 14448878
Number of successful extensions: 37171
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 35938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37158
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 63792713725
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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