Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0922
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    29   0.96 
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   2.9  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    27   3.9  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    26   6.8  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    26   6.8  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    25   9.0  
SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyc...    25   9.0  
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   9.0  
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    25   9.0  

>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = +3

Query: 141 DFNAHHVAFGCMTTKSRGHQLYDLIDEFDLCVLNN 245
           D   H     C       + LYD IDE D  VLN+
Sbjct: 196 DHRLHQSLLSCFLVVLLSNTLYDSIDELDFSVLNS 230


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -2

Query: 325  WSDWSTTKTDINSRWISVRIINSRKLPLLRTHRSNSSIKSYN 200
            W D +  +  I+ R I   +IN   LPL+ T ++NSS  S N
Sbjct: 2818 WDDINLWRDLISWRQIVFSMINRVYLPLVPTIQANSSADSSN 2859


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 185 FRGHTPKCHMVSVEISSH 132
           FR HTPK   + +E+SSH
Sbjct: 655 FRFHTPKIQSLLIELSSH 672


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 593 KQITIVANLQHLGGVTHVNRVLLKLM 670
           KQ++ V N+  + G THVN V  K++
Sbjct: 355 KQVSFVNNISTIRGGTHVNYVANKIV 380


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +3

Query: 153 HHVAFGCMTTKSRGHQLYDLIDEFDLCVLNNGSFL 257
           H +  GC+T K RG+ L+  + +    ++    F+
Sbjct: 409 HELVMGCITLKIRGYGLFFQMTQIPYIIIQRQKFV 443


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 646 EQSVIKTYEALKLYRRHPTIDNYINYKKLDAVKK 747
           E  +++T+E +   RR   I  +  +KK+DA  K
Sbjct: 748 ELGIVRTFEFVSQLRRMAVIVKHGKFKKMDAYVK 781


>SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 140

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 646 EQSVIKTYEALKLYRRHPTIDNYINYKKLDAVKKKTISE 762
           E  + K Y+A+K  RR P  + Y   K  +  KKK I E
Sbjct: 82  ELDLDKEYDAVKQLRRMPAEELYPLAKLHEEEKKKNIRE 120


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +3

Query: 255 LLLIILTEIH-RL-LMSVFVVLQSLHYANGGCMMILWGAIIF 374
           +L   L+E++ RL L SV +V+  +    GGC   +W  +IF
Sbjct: 162 VLFAPLSEVYGRLPLYSVTLVIFVVFQIGGGCSKNIWSLVIF 203


>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 594 FDKLWHSIPLKCIKPFDKFVI 532
           ++  W + PL C+  F KFV+
Sbjct: 76  YNAKWQTGPLSCVSVFHKFVV 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,125,275
Number of Sequences: 5004
Number of extensions: 65460
Number of successful extensions: 181
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)