Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0922
(764 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11838| Best HMM Match : RVT_1 (HMM E-Value=0) 35 0.062
SB_12291| Best HMM Match : Exo_endo_phos (HMM E-Value=1.8e-09) 35 0.083
SB_18309| Best HMM Match : Exo_endo_phos (HMM E-Value=2.3e-09) 33 0.25
SB_52564| Best HMM Match : Exo_endo_phos (HMM E-Value=3.2e-09) 33 0.25
SB_51419| Best HMM Match : DNA_ligase_A_C (HMM E-Value=8.6) 33 0.25
SB_50370| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_49192| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_28047| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_6968| Best HMM Match : NUC202 (HMM E-Value=1.4e-05) 30 2.3
SB_14778| Best HMM Match : MH1 (HMM E-Value=2.8026e-45) 29 3.1
SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_20620| Best HMM Match : zf-HIT (HMM E-Value=8.5e-10) 29 4.1
SB_44234| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_16786| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_51296| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_20378| Best HMM Match : Adeno_E1B_19K (HMM E-Value=5.7) 28 7.2
SB_13218| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_11619| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_54335| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_33578| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076) 28 9.5
SB_4560| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_11838| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1009
Score = 35.1 bits (77), Expect = 0.062
Identities = 19/79 (24%), Positives = 37/79 (46%)
Frame = +1
Query: 526 QSYDEFIERLDTLKRDTVPKFVKANNYRCKPPAPWWSDTCEQSVIKTYEALKLYRRHPTI 705
+S +E + T DT+ +F+ + + K PW ++ + K A K +R
Sbjct: 357 RSVEENWNAISTCISDTMERFIPSKTSKTKRHLPWIGAPIKKLMRKRDRAFKKSKRTGKE 416
Query: 706 DNYINYKKLDAVKKKTISE 762
+++NYK+L + +I E
Sbjct: 417 KDHVNYKRLRNIVSNSIKE 435
>SB_12291| Best HMM Match : Exo_endo_phos (HMM E-Value=1.8e-09)
Length = 843
Score = 34.7 bits (76), Expect = 0.083
Identities = 18/79 (22%), Positives = 37/79 (46%)
Frame = +1
Query: 526 QSYDEFIERLDTLKRDTVPKFVKANNYRCKPPAPWWSDTCEQSVIKTYEALKLYRRHPTI 705
+S +E + T D + +F+ + + K PW ++ + K A K+ +R
Sbjct: 319 RSVEENWNAISTCISDAMERFIPSKTSKTKRHLPWIGAPIKKLMRKRDRAFKMSKRTGKE 378
Query: 706 DNYINYKKLDAVKKKTISE 762
+++NYK+L + +I E
Sbjct: 379 KDHVNYKRLRNIVSNSIKE 397
>SB_18309| Best HMM Match : Exo_endo_phos (HMM E-Value=2.3e-09)
Length = 895
Score = 33.1 bits (72), Expect = 0.25
Identities = 18/79 (22%), Positives = 36/79 (45%)
Frame = +1
Query: 526 QSYDEFIERLDTLKRDTVPKFVKANNYRCKPPAPWWSDTCEQSVIKTYEALKLYRRHPTI 705
+S +E + T D + +F+ + + K PW ++ + K A K +R
Sbjct: 474 RSVEENWNAISTCISDAMERFIPSKTSKTKRHLPWIGAPIKKLMRKRDRAFKKSKRTGKE 533
Query: 706 DNYINYKKLDAVKKKTISE 762
+++NYK+L + +I E
Sbjct: 534 KDHVNYKRLRNIVSNSIKE 552
>SB_52564| Best HMM Match : Exo_endo_phos (HMM E-Value=3.2e-09)
Length = 748
Score = 33.1 bits (72), Expect = 0.25
Identities = 18/79 (22%), Positives = 36/79 (45%)
Frame = +1
Query: 526 QSYDEFIERLDTLKRDTVPKFVKANNYRCKPPAPWWSDTCEQSVIKTYEALKLYRRHPTI 705
+S +E + T D + +F+ + + K PW ++ + K A K +R
Sbjct: 387 RSVEENWNAISTCISDAMERFIPSKTSKTKRHLPWIGAPIKKLMRKRDRAFKKSKRTGKE 446
Query: 706 DNYINYKKLDAVKKKTISE 762
+++NYK+L + +I E
Sbjct: 447 KDHVNYKRLRNIVSNSIKE 465
>SB_51419| Best HMM Match : DNA_ligase_A_C (HMM E-Value=8.6)
Length = 291
Score = 33.1 bits (72), Expect = 0.25
Identities = 18/79 (22%), Positives = 36/79 (45%)
Frame = +1
Query: 526 QSYDEFIERLDTLKRDTVPKFVKANNYRCKPPAPWWSDTCEQSVIKTYEALKLYRRHPTI 705
+S +E + T D + +F+ + + K PW ++ + K A K +R
Sbjct: 102 RSVEENWNAISTCISDAMERFIPSKTSKTKRHLPWIGAPIKKLMRKRDRAFKKSKRTGKE 161
Query: 706 DNYINYKKLDAVKKKTISE 762
+++NYK+L + +I E
Sbjct: 162 KDHVNYKRLRNIVSNSIKE 180
>SB_50370| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1059
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/70 (24%), Positives = 34/70 (48%)
Frame = +2
Query: 446 NKTDWTKYNELSLTAFSNFEVIMRIHYSHMTNLSKGLIHLRGILCQSLSKQITIVANLQH 625
NK + L+ ++V ++ +S+ L+ + H+ + +L+ Q+T ++ H
Sbjct: 787 NKVTHASHVTLASQVALPYQVANQVTHSNHVTLANQVTHVNHV---TLANQVTHANHVTH 843
Query: 626 LGGVTHVNRV 655
G VTH N V
Sbjct: 844 AGQVTHANHV 853
>SB_49192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 188
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +1
Query: 544 IERLDTLKRDTVPKFVKANNYRC-KPPAPWWSDTCEQSVIKTYEALKLYRRHPTIDNYIN 720
+E L+TL R+ + + + +PPAPW + Q + + + ++ R D+ N
Sbjct: 3 LEMLNTLLRECIDRHAPLKRTKVTRPPAPWLKELDIQKLQQDFRNMRTEARKEKSDSIWN 62
Query: 721 Y 723
Y
Sbjct: 63 Y 63
>SB_28047| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 962
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +1
Query: 544 IERLDTLKRDTVPKFVKANNYRC-KPPAPWWSDTCEQSVIKTYEALKLYRRHPTIDNYIN 720
+E L+TL R+ + + + +PPAPW + Q + + + ++ R D+ N
Sbjct: 419 LEMLNTLLRECIDRHAPLKRTKVTRPPAPWLKELDIQKLQQDFRNMRTEARKEKSDSIWN 478
Query: 721 Y 723
Y
Sbjct: 479 Y 479
>SB_6968| Best HMM Match : NUC202 (HMM E-Value=1.4e-05)
Length = 517
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/79 (21%), Positives = 35/79 (44%)
Frame = +1
Query: 526 QSYDEFIERLDTLKRDTVPKFVKANNYRCKPPAPWWSDTCEQSVIKTYEALKLYRRHPTI 705
+S +E + T D + +F+ + + K PW ++ + K A K +
Sbjct: 22 RSVEENWNAISTCISDAMERFIPSKTSKTKRHLPWIGAPIKKLMRKRDRAFKKSKWTGKE 81
Query: 706 DNYINYKKLDAVKKKTISE 762
+++NYK+L + +I E
Sbjct: 82 KDHVNYKRLRNIVSNSIKE 100
>SB_14778| Best HMM Match : MH1 (HMM E-Value=2.8026e-45)
Length = 1133
Score = 29.5 bits (63), Expect = 3.1
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Frame = +2
Query: 383 TRVLLSVDRYQINPPIEKFLYNKTDWTKYNELSLTA----FSNFEVIMRIHYSHMTNLSK 550
T VLLS+++Y+ PPIE +L + + +T +S + Y M K
Sbjct: 542 TLVLLSMNKYEDLPPIESYLGTRQAPPAHTTTWMTTEPPQWSRLRMTYSFEYFIMKQHGK 601
Query: 551 GLIHLRGILCQSLSKQITIVANL 619
L+HL + +S Q+ I +L
Sbjct: 602 NLLHLEYL--ESREIQLNIFRSL 622
>SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2250
Score = 29.1 bits (62), Expect = 4.1
Identities = 23/75 (30%), Positives = 32/75 (42%)
Frame = +3
Query: 84 ISKLRNIIRDLPKPIYVAGDFNAHHVAFGCMTTKSRGHQLYDLIDEFDLCVLNNGSFLLL 263
+S L N I DL P D NA +G T+K H LYDL+ ++ S +L
Sbjct: 442 VSNLENNI-DLNVPKGQQYDINALEYTWGTDTSKLTRHGLYDLVVAAEVLYDEKDSVVLA 500
Query: 264 IILTEIHRLLMSVFV 308
+ + VFV
Sbjct: 501 KSIARVVHSKSKVFV 515
>SB_20620| Best HMM Match : zf-HIT (HMM E-Value=8.5e-10)
Length = 567
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = -2
Query: 358 HRIIMHPPFA*WSDWSTTKTDINSRWISVRIINSRKLPLLRTHRSNS 218
+R+ HPPFA W + +TD S+ +R +N + L+R RS S
Sbjct: 216 NRLAAHPPFASWRNSEEARTDRPSQ--QLRSLNG-EWRLMRPQRSES 259
>SB_44234| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Frame = +3
Query: 51 VYCPPSNGSFRISK-LRNIIRDLPK---PIYVAGDFN 149
+Y PP N + + L NI++ L K P Y+ GDFN
Sbjct: 90 IYRPPDNNYNQFEQSLNNILQQLDKEKKPCYLMGDFN 126
>SB_16786| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 251
Score = 28.3 bits (60), Expect = 7.2
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Frame = +3
Query: 9 LSLYVSGNHLTILCVYCPPSNGS---FRISKLRNI-IRDLPKPIYVAGDFNAHHVAFGCM 176
L ++ + N+ LCV CP SN S F K ++ I DL + AH C+
Sbjct: 73 LHVFETANNPKGLCVLCPSSNNSLLAFPARKTGHVQIVDLANTERAPLEIAAHEAPMSCL 132
Query: 177 TTKSRGHQL 203
+G +L
Sbjct: 133 AMNLQGTRL 141
>SB_51296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 84
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -2
Query: 358 HRIIMHPPFA*WSDWSTTKTDINSRWISVRIINSRKLP-LLRTH 230
+R+ HPPFA W + T+TD S+ + + + R + L TH
Sbjct: 33 NRLAAHPPFASWRNSEETRTDRPSQQLLSQNVEWRLMRYFLLTH 76
>SB_20378| Best HMM Match : Adeno_E1B_19K (HMM E-Value=5.7)
Length = 132
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = -2
Query: 358 HRIIMHPPFA*WSDWSTTKTDINSRWISVRIINSRKLPLLRTHRS 224
+R+ HPPFA W + +TD S+ +R +N + L+RT R+
Sbjct: 69 NRLAAHPPFASWRNSEEARTDRPSQ--QLRSLNG-EWRLMRTKRN 110
>SB_13218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 156
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 358 HRIIMHPPFA*WSDWSTTKTD 296
+R+ HPPFA WS+ +TD
Sbjct: 83 NRLAAHPPFASWSNSEEARTD 103
>SB_11619| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 153
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -3
Query: 348 SCTHHSHSGVIGALQKLTSIADGFRLG*LIVGSYHC*GHIDQIHQSN 208
SC + G IG L +L+ R+ L VGS+ C H D + +SN
Sbjct: 40 SCKTRNGKGCIGRLYQLSEELS--RVAKLPVGSHVCRRHSDMLRRSN 84
>SB_54335| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 358 HRIIMHPPFA*WSDWSTTKTD 296
+R+ HPPFA WS+ +TD
Sbjct: 56 NRLAAHPPFASWSNSEEARTD 76
>SB_33578| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076)
Length = 888
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 111 DLPKPIYVAGDFNAHHVAFGCMTTKSRG 194
D P IY+ GDFN HV + +T ++ G
Sbjct: 379 DNPPAIYLLGDFNFRHVDWVSVTHRNGG 406
>SB_4560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 156
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 358 HRIIMHPPFA*WSDWSTTKTD 296
+R+ HPPFA WS+ +TD
Sbjct: 83 NRLAAHPPFASWSNSEEARTD 103
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,791,611
Number of Sequences: 59808
Number of extensions: 484786
Number of successful extensions: 4637
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 4507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4637
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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