Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0919
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|...    28   1.5  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    26   4.5  
SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase ...    26   5.9  
SPBC119.16c |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.9  
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...    26   5.9  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    25   7.8  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   7.8  

>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 482

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -2

Query: 121 LVHPVHIEGRKAISVKRNFSNFTKEPFEV*TFGKKYHNKK 2
           LVH    E  + ISV +   N+ ++P +   F KKY +KK
Sbjct: 399 LVHYSGYEEYQLISVVKKMINYLQKPVQHEAFFKKYASKK 438


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 311 HQKSYAFHLFVSVVYSRNVSSMENINNFFFKYLIWVLY 198
           H KSY  +   SVV S + +S    N+F    ++W  Y
Sbjct: 335 HDKSYKSNYLFSVVLSPHQASWNIYNSFDNSMVLWCPY 372


>SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -1

Query: 308 QKSYAFHLFVSVVYSRNVSSMENINNFFFKYL 213
           Q++Y  H F  V+ S  + S+ ++ NF +  L
Sbjct: 231 QRTYGDHYFSLVLASETIYSLPSLENFLYMLL 262


>SPBC119.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 466 KHINRSISKFYYK*PQNILCLAVSCVLFI 380
           KHIN    K+++    +++ LA +C LFI
Sbjct: 415 KHINWQYGKYFWLRRVSLIFLASTCFLFI 443


>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -2

Query: 421 QNILCLAVSCVLFIDYTSYSYKISCVFLSIVHVEYCNTKNP 299
           +N+L   V  V F+DY++ SY  + V  S+   E C  K P
Sbjct: 352 RNLLSWGVRHVTFVDYSTVSYS-NPVRQSLFTFEDCKRKLP 391


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1402

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 245  ENINNFFFKYLIWVLY*DIFLYYFFES 165
            E +NNFF+K ++W     +F Y  + +
Sbjct: 1068 EMVNNFFYKSVVWTF--TLFWYQIYNN 1092


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 86   SFSPFDVYRVYQKEWLILKHLIVEILGTQKNNIKKYLS 199
            S +P  +  +Y+K WL +   +  +L T  N I   LS
Sbjct: 1440 SINPKILLNIYEKSWLNIAESLTILLSTDANLIYGILS 1477


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,027,592
Number of Sequences: 5004
Number of extensions: 64792
Number of successful extensions: 139
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)