Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0919
         (695 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0223 - 26525618-26526112,26526203-26526370,26526649-265274...    29   4.7  
08_02_0775 + 21070898-21071290,21071406-21071504,21075103-210751...    28   6.2  

>05_06_0223 -
           26525618-26526112,26526203-26526370,26526649-26527473,
           26527898-26528004,26529701-26529767
          Length = 553

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +3

Query: 15  YFFPNV*TSNGSFVKLEKFRLTEIAFRPSMCTGCTR 122
           Y FP    S GS   L+   L   AFRP    GC+R
Sbjct: 170 YSFPCSLLSGGSGRSLQHLELVNCAFRPMAGLGCSR 205


>08_02_0775 +
           21070898-21071290,21071406-21071504,21075103-21075126,
           21076344-21076391,21076536-21076788,21076945-21077055,
           21077544-21077680,21077778-21077891,21077982-21078181,
           21078268-21078516,21078730-21078886
          Length = 594

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
 Frame = +2

Query: 44  WLFCEVGKISLNRNSFSPFDVYRVYQKEWL-----ILKHLIVEILGTQK 175
           W F  VG + +     S F  YR  Q  W      + K ++VEIL  +K
Sbjct: 346 WKFVYVGDVKVKSELPSTFKAYRFQQHRWSCGPANLFKKMMVEILENKK 394


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,810,400
Number of Sequences: 37544
Number of extensions: 308473
Number of successful extensions: 508
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)