Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0919
         (695 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20716| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_38160| Best HMM Match : Toxin_29 (HMM E-Value=3.7)                  29   4.8  
SB_26361| Best HMM Match : fn3 (HMM E-Value=0)                         29   4.8  
SB_3709| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.3  

>SB_20716| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 423

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 147 RCFRINHSFWYTLYTSKGEK 88
           RCF I H  WY  +++ GEK
Sbjct: 282 RCFNIGHKVWYQDFSASGEK 301


>SB_38160| Best HMM Match : Toxin_29 (HMM E-Value=3.7)
          Length = 534

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -3

Query: 546 RFKFKLRLIFIKNSGPG--ELCSATRFVSNTSTGLFQNS 436
           +FK   +++ +  +G G  E+C+  R +S T   LFQ S
Sbjct: 446 KFKITSKMVHVYQTGAGYDEICTQRREISKTRCDLFQTS 484


>SB_26361| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 1898

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 162  NISTMRCFRINHSFWYTLYTSKGE 91
            N++ +R F + + FW T Y SKGE
Sbjct: 1224 NVTNLRKF-VEYGFWVTAYNSKGE 1246


>SB_3709| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 181

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = -1

Query: 296 AFHLFVSVVYSRNVSSMENINNFFFKYLIWVLY*DIFLYYFFESPISLL*GVSGLTILSG 117
           A H+FVS  YSR+V     +++     L + +Y    +Y+FF   +  +     L I SG
Sbjct: 57  AVHVFVSSYYSRDVHVFVRVSD--TSVLPYTVYRPAVIYFFFLDQLQSI-FKKNLVISSG 113

Query: 116 T 114
           T
Sbjct: 114 T 114


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,639,562
Number of Sequences: 59808
Number of extensions: 405503
Number of successful extensions: 655
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)