Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0916
(756 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 30 0.41
SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr 2||... 29 0.95
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 27 2.9
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 27 3.8
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha... 27 3.8
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos... 26 5.0
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 26 6.7
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ... 25 8.8
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 25 8.8
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa... 25 8.8
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 29.9 bits (64), Expect = 0.41
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -3
Query: 637 CLRCWGKSGNWNSWR 593
C+ CWG++G W W+
Sbjct: 340 CVVCWGRTGGWRLWK 354
>SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 28.7 bits (61), Expect = 0.95
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2
Query: 218 DDVQGRIPSQEFEFSIFYEKMREEAIALFKLF 313
DD+ I S + E FYE+M LFK+F
Sbjct: 264 DDIVSNIGSAQREIVKFYERMSSNRALLFKIF 295
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 27.1 bits (57), Expect = 2.9
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -3
Query: 547 IFSRQGN-HPSS*RVHFIFNFHVDKILRISF 458
+F ++ N HPSS +HF++N + I F
Sbjct: 1755 LFEKEANEHPSSIALHFVYNVDKENIYSYKF 1785
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 667 LNAYYYYFHSHLPFWWNSGKYGAFK 741
LN Y YF +H P K+G+FK
Sbjct: 119 LNKYASYFQAHEPTLQKLAKFGSFK 143
>SPAC13G7.04c |mac1||membrane anchored protein Mac1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 756
Score = 26.6 bits (56), Expect = 3.8
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = -1
Query: 558 VIITYFLVKATIHHLNVSILFLTSMLT 478
V + FLV ++ +N+ ++F+T++LT
Sbjct: 104 VFFSIFLVNQAVNIINIIVVFITTLLT 130
>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
Plc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 899
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +2
Query: 197 ESLRKFHDDVQGRIPSQEFEFSIFYEKMREEAIALFKLFYYAKD 328
E+ +K D G++ +EF+ + K R E + +FK + D
Sbjct: 337 ETFQKADADHSGKLSFEEFQHFVSLLKTRSEIVDIFKEYTSGSD 380
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 25.8 bits (54), Expect = 6.7
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = -2
Query: 245 GKESDLVHHHEIFVGFHVCVAVLAGLDVEVLGDFVVLSFIADLVNVVE-KRQNLLLLFDE 69
G S +HHH++ + H + L G EV G L++ +D + + N++ ++D
Sbjct: 279 GSRSGAIHHHDVRIANHQ-IGTLQGHSSEVCG----LAWRSDGLQLASGGNDNVVQIWDA 333
Query: 68 RS 63
RS
Sbjct: 334 RS 335
>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 8.8
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +1
Query: 550 YNYGIIKENEQFVMYANYSNSLTYPNNEDRIAYLTEDV--GLNAYYY 684
YN+ N++ + ++ T N +++ YLT DV G + YYY
Sbjct: 233 YNFNFSAPNKRMQRFT--ASEATTVNGQNQSVYLTYDVPYGRSLYYY 277
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.4 bits (53), Expect = 8.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 192 NMKAYENFMMMYKVGFLPKNLNSRSFTK 275
N+KAY F+ + K F KN+ S+ +K
Sbjct: 349 NIKAYTLFVSLRKYSFSSKNVQSKEKSK 376
>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
Swd2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 357
Score = 25.4 bits (53), Expect = 8.8
Identities = 14/57 (24%), Positives = 23/57 (40%)
Frame = +1
Query: 529 CLDEKICYNYGIIKENEQFVMYANYSNSLTYPNNEDRIAYLTEDVGLNAYYYYFHSH 699
C+ K + K + ++SNSL + + ++ DV N Y YF H
Sbjct: 55 CISGKFVKSLASKKYGAHLGRFTHHSNSLIHASTKEDNTVRYLDVVTNRYLRYFPGH 111
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,999,776
Number of Sequences: 5004
Number of extensions: 62413
Number of successful extensions: 200
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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