Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0916
         (756 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70285-2|CAA94289.2|  183|Caenorhabditis elegans Hypothetical pr...    32   0.51 
AL117205-6|CAB55166.2|  167|Caenorhabditis elegans Hypothetical ...    29   3.6  
Z93389-1|CAB07668.1|  346|Caenorhabditis elegans Hypothetical pr...    29   4.7  
AF016686-8|AAB66236.1|  388|Caenorhabditis elegans Hypothetical ...    29   4.7  
Z92838-2|CAB07408.1|  211|Caenorhabditis elegans Hypothetical pr...    28   8.2  
Z70686-10|CAD21656.1|  533|Caenorhabditis elegans Hypothetical p...    28   8.2  
Z70683-8|CAD21626.1|  533|Caenorhabditis elegans Hypothetical pr...    28   8.2  

>Z70285-2|CAA94289.2|  183|Caenorhabditis elegans Hypothetical
           protein F56C4.2 protein.
          Length = 183

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 19/56 (33%), Positives = 30/56 (53%)
 Frame = +2

Query: 194 HESLRKFHDDVQGRIPSQEFEFSIFYEKMREEAIALFKLFYYAKDFECFYKTACYA 361
           HE L K   +V+ R+PS +     FY+    +    F+ FYY + + CFY + CY+
Sbjct: 50  HEYLIKSRTNVECRVPSDDL---FFYD----DKACSFR-FYYRRSY-CFYNSRCYS 96


>AL117205-6|CAB55166.2|  167|Caenorhabditis elegans Hypothetical
           protein Y116A8A.7 protein.
          Length = 167

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 6   LIALALSSTVPEFKTTPVDAAFVEKQKKIL 95
           L++L   +T+PE+++ P  A   E  KKI+
Sbjct: 30  LVSLTKRNTIPEYQSVPPGAVITEPAKKII 59


>Z93389-1|CAB07668.1|  346|Caenorhabditis elegans Hypothetical
           protein T13F3.1 protein.
          Length = 346

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = -3

Query: 496 FNFHVDKILRIS-FVWSR*NEAGGVRALDNSYVVGV*EHSLVHVDSGVACCFVETFKIFG 320
           ++  +D I+ I+ FVW R NE  GV+ L+    +G+    LV + S     +  T   + 
Sbjct: 171 YDLKIDDIVYIAAFVWPR-NETTGVKYLNKRSAIGIGFDQLVVIISLTVIAYCGTCCYYK 229

Query: 319 IIEQL 305
           I +Q+
Sbjct: 230 IQQQM 234


>AF016686-8|AAB66236.1|  388|Caenorhabditis elegans Hypothetical
           protein R07C3.6 protein.
          Length = 388

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +3

Query: 9   IALALSSTVPEFKTTPVDAAFVEKQKKILSLFYNVNEISYEAEYYKVAQ 155
           I   LS   P  K+    A     + K+ +    VN+ISYE + YK ++
Sbjct: 19  IRFQLSRRCPSLKSAEKSAPLFINKLKLCTNSVVVNDISYEVDVYKTSE 67


>Z92838-2|CAB07408.1|  211|Caenorhabditis elegans Hypothetical
           protein T03D8.3 protein.
          Length = 211

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -2

Query: 206 VGFHVCVAVLAGLDVEVLGDFVVLSFIADLVNVVEK 99
           V F V VA + GLD+E  GDFV+ S   D ++++ +
Sbjct: 8   VFFTVGVAAIYGLDLENAGDFVLPS--GDFIDLISR 41


>Z70686-10|CAD21656.1|  533|Caenorhabditis elegans Hypothetical
           protein F13B12.6 protein.
          Length = 533

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -3

Query: 331 KIFGIIEQLEQRDGFFPHFFV-KDRE-FKFLGRNPTLY 224
           +I+G       RDG F HF V K +E ++FLG N  ++
Sbjct: 424 RIWGYTVSYASRDGSFKHFLVEKIKEGYQFLGTNQVVH 461


>Z70683-8|CAD21626.1|  533|Caenorhabditis elegans Hypothetical
           protein F13B12.6 protein.
          Length = 533

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -3

Query: 331 KIFGIIEQLEQRDGFFPHFFV-KDRE-FKFLGRNPTLY 224
           +I+G       RDG F HF V K +E ++FLG N  ++
Sbjct: 424 RIWGYTVSYASRDGSFKHFLVEKIKEGYQFLGTNQVVH 461


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,304,640
Number of Sequences: 27780
Number of extensions: 337992
Number of successful extensions: 1010
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)