Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0916
         (756 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17620.1 68417.m02636 glycine-rich protein                          29   2.5  
At4g17220.1 68417.m02590 expressed protein                             29   2.5  
At1g58440.1 68414.m06648 squalene monooxygenase, putative / squa...    29   3.3  
At3g29638.1 68416.m03731 expressed protein ; expression supporte...    28   5.8  
At5g13960.1 68418.m01632 SET domain-containing protein (SUVH4) i...    28   7.7  

>At4g17620.1 68417.m02636 glycine-rich protein
          Length = 544

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +1

Query: 535 DEKICYNYGIIKENEQFVM 591
           DE +C+ YG +KENE +++
Sbjct: 487 DEVLCWLYGTVKENEDYIL 505


>At4g17220.1 68417.m02590 expressed protein
          Length = 513

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +2

Query: 188 HKHESLRKFHDDVQGRIPSQEFEFSIFYEKMREEAIALFKL 310
           H+ +S RK  +D  G + S++      Y+++++E IAL KL
Sbjct: 400 HEEDSERKTEED--GNVYSEDMVSGFLYDRLQKEVIALRKL 438


>At1g58440.1 68414.m06648 squalene monooxygenase, putative /
           squalene epoxidase, putative similar to SP|O65404 (SE
           1,1), SP|O65402 (SE 1,2) 6566341 dbj AB008021.1 AB008021
          Length = 531

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +2

Query: 203 LRKFHDDVQGRIPSQEFEFSIFYEKMREEAIAL 301
           L KFH+DV GR     F    F ++MRE+A +L
Sbjct: 147 LEKFHEDVSGR----SFHNGRFIQRMREKAASL 175


>At3g29638.1 68416.m03731 expressed protein ; expression supported
           by MPSS
          Length = 412

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/58 (25%), Positives = 23/58 (39%)
 Frame = +1

Query: 508 HVKMMDGCLDEKICYNYGIIKENEQFVMYANYSNSLTYPNNEDRIAYLTEDVGLNAYY 681
           H+K +   L E +CY +G +K     V    Y N         R+     D+   A+Y
Sbjct: 136 HIKRVKEGLFELLCYTFGDLKLKIDDVRGQGYDNGSNIKGKHKRVQKRLLDINSIAFY 193


>At5g13960.1 68418.m01632 SET domain-containing protein (SUVH4)
           identical to SUVH4 [Arabidopsis thaliana] GI:13517749;
           contains Pfam profiles PF00856: SET domain, PF05033:
           Pre-SET motif, PF02182: YDG/SRA domain; identical to
           cDNA SUVH4 (SUVH4) GI:13517748
          Length = 624

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -3

Query: 742 P*KLRIYQSSTRTVSVSGNSNNKHLGQHLQLSKQFCLRCWGK 617
           P KL   Q   + +SVS N  + +L  HL+++K  CLR + K
Sbjct: 75  PPKLTAMQKGKQKLSVSLNGKDVNLEPHLKVTK--CLRLFNK 114


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,224,779
Number of Sequences: 28952
Number of extensions: 308666
Number of successful extensions: 880
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)