Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0915
         (325 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    25   0.20 
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    25   0.20 
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    25   0.20 
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       21   3.2  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          20   5.6  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    20   5.6  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    20   5.6  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    19   9.9  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 25.0 bits (52), Expect = 0.20
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 27  TRPSGRWCELPSAGLC 74
           ++ S + CE+PSAGLC
Sbjct: 97  SKKSCQGCEMPSAGLC 112


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
          ortholog protein.
          Length = 471

 Score = 25.0 bits (52), Expect = 0.20
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 27 TRPSGRWCELPSAGLC 74
          ++ S + CE+PSAGLC
Sbjct: 45 SKKSCQGCEMPSAGLC 60


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 25.0 bits (52), Expect = 0.20
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 27  TRPSGRWCELPSAGLC 74
           ++ S + CE+PSAGLC
Sbjct: 228 SKKSCQGCEMPSAGLC 243


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 21.0 bits (42), Expect = 3.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 163 CLEPPDSRGSTVSISLPDSARLAS 92
           C  PPD  G+T+S S P+  R +S
Sbjct: 168 CRCPPDWEGTTLSQS-PNRRRASS 190


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 20.2 bits (40), Expect = 5.6
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 102 LAESGKDMLTVEPRESGGSKQCDFTS 179
           L +S  D     PR  GG+K   F++
Sbjct: 97  LKDSSSDSEDERPRPGGGTKYQTFSN 122


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 20.2 bits (40), Expect = 5.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 267 ARVKKKPIASISAIQMGFDVAS 202
           A   +KP +    ++MG D+AS
Sbjct: 202 AMFSRKPCSINENLKMGLDIAS 223


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 20.2 bits (40), Expect = 5.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 267 ARVKKKPIASISAIQMGFDVAS 202
           A   +KP +    ++MG D+AS
Sbjct: 202 AMFSRKPCSINENLKMGLDIAS 223


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 19.4 bits (38), Expect = 9.9
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 260 LRKNR*HRSPRSKWASTSRLA 198
           LRK++ +R PR+ + +   LA
Sbjct: 109 LRKHKPNRKPRTPFTTQQLLA 129


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,789
Number of Sequences: 336
Number of extensions: 1485
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  6155018
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)