Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0914
         (442 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    25   3.9  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   3.9  
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch...    24   9.0  

>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +2

Query: 53   PKCLSYTLLCFGQVHVIYLG----HHQYVCMLDINPKQLQHSKCYPSHFLFQTLLI 208
            P  LS T   FG    +Y+     H++  C+L I  +       +PS F + + L+
Sbjct: 1548 PTVLSKTSAKFGYSQSLYVRMFKQHNESACLLSIQYRMNPEISRFPSKFFYNSKLL 1603


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2310

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -1

Query: 334 NAQQYLKISNYEDTVRQLDICYAIVKRNFYDSKV 233
           +A   ++  +YE     L  C  ++ RNF++SK+
Sbjct: 807 SADALMQFGSYEYATELLKSCLFLLPRNFWNSKL 840


>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 249 STIPKSHNRIVSCTINRV*NRKCEG*HLLCCSCL 148
           ST+ K  +R   C I R   +KC+  H  C  CL
Sbjct: 10  STVKKPRSRY-GCLICRSMRKKCDEVHPQCGRCL 42


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,824,727
Number of Sequences: 5004
Number of extensions: 36148
Number of successful extensions: 94
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)