Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0914
         (442 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1014 - 23586552-23587224,23587402-23587463,23587735-235879...    29   1.7  
10_08_0332 - 16843295-16843356,16843884-16846656                       28   2.9  
08_02_0306 - 15599409-15599657,15600326-15600475,15600574-156006...    27   5.1  
11_06_0207 + 21214631-21216121                                         27   8.8  
04_01_0571 + 7353561-7353620,7354331-7354477                           27   8.8  

>08_02_1014 -
           23586552-23587224,23587402-23587463,23587735-23587950,
           23588125-23588209,23589232-23589389,23589505-23589625,
           23590081-23590243,23590330-23590415,23590660-23590742,
           23590816-23591677,23593266-23593693
          Length = 978

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +2

Query: 146 PKQLQHSKCYPSHFLFQTLLIVQETILLWDFGIVEVAFHNCITNVKLPYSVF 301
           PK ++H    P+HF ++  + + E + L  FG+  +  ++C  N  L   +F
Sbjct: 420 PKVVRHYPSEPTHFPYELFIKLYEKVELQPFGLHNLG-NSCYANAVLQCLMF 470


>10_08_0332 - 16843295-16843356,16843884-16846656
          Length = 944

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = -1

Query: 400 FSNSFYASIPEXMIRQGSIDDINAQQYLKISNYEDTVRQL--DICYAIVKRNFYDSKVP 230
           + NSF  S PE ++R G+I  ++  Q        DT+ +   ++ Y  +  N +   +P
Sbjct: 202 YLNSFNGSFPEFVLRSGNITYLDLSQNTLFGKIPDTLPEKLPNLRYLNLSINAFSGSIP 260


>08_02_0306 -
           15599409-15599657,15600326-15600475,15600574-15600663,
           15600776-15601126,15601389-15601430,15601523-15601600
          Length = 319

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 9/48 (18%)
 Frame = +1

Query: 289 LQCLH-N*KSLDIVVH*CH--------LCFLDESFXLELKHKMNLKIF 405
           L  +H N +SL++++H CH         C+LD    L L H   +KIF
Sbjct: 104 LNLVHVNRESLEVMLHSCHNLQWLSLVRCYLDGKLHLVLSHLRYIKIF 151


>11_06_0207 + 21214631-21216121
          Length = 496

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 95  HVIYLGHHQYVCMLDINPKQLQHSKCY 175
           HV++LGH+Q +C+      QL+ +  Y
Sbjct: 385 HVLFLGHNQSICLRAEEYPQLRANHVY 411


>04_01_0571 + 7353561-7353620,7354331-7354477
          Length = 68

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +2

Query: 155 LQHSKCYPSHFLFQTLLIVQETILLWDFG 241
           ++ +K +  ++LFQT++  +   L W FG
Sbjct: 1   MEDAKIFQGYYLFQTIMFREGYYLSWAFG 29


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,853,716
Number of Sequences: 37544
Number of extensions: 211259
Number of successful extensions: 447
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)