Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0914
(442 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47160| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_44586| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_216| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.2
SB_41134| Best HMM Match : EGF_CA (HMM E-Value=0) 27 9.1
SB_36107| Best HMM Match : zf-CCHC (HMM E-Value=0.00023) 27 9.1
SB_22726| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_17098| Best HMM Match : WD40 (HMM E-Value=8.9e-32) 27 9.1
SB_45147| Best HMM Match : zf-CCHC (HMM E-Value=0.0051) 27 9.1
SB_39617| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38) 27 9.1
SB_23788| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38) 27 9.1
SB_9257| Best HMM Match : RVT_1 (HMM E-Value=9.1e-32) 27 9.1
SB_8223| Best HMM Match : RVT_1 (HMM E-Value=4e-27) 27 9.1
>SB_47160| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1806
Score = 29.1 bits (62), Expect = 1.7
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +1
Query: 160 AQ*MLSLTLPISNSVDSTGNNPVMGLWNRRSCVSQLHNKCQ 282
AQ +++++PI NS T + LW SC +Q + KCQ
Sbjct: 211 AQETIAISIPIDNSTGLTSSRGYT-LWIGCSCKNQSYYKCQ 250
>SB_44586| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 542
Score = 29.1 bits (62), Expect = 1.7
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +2
Query: 119 QYVCMLDINPKQLQHSKCYPSH-FLFQTLL 205
+Y+ +DIN ++ H C SH +LF T L
Sbjct: 389 EYIMRIDINSGEITHKTCLASHQWLFNTTL 418
>SB_216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1315
Score = 27.5 bits (58), Expect = 5.2
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +2
Query: 47 NIPKCLSYTLLCFGQVHVIYLGHHQYVCMLDINPKQLQHSK 169
N P C SY +C+ ++ LG + ++ + D+ P H +
Sbjct: 28 NDPNCFSYVFMCW-FARILNLGSNHHLQLEDLTPIHPDHDE 67
>SB_41134| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 802
Score = 26.6 bits (56), Expect = 9.1
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +2
Query: 80 CFGQVHVIY-LGHHQYVCMLDINPKQLQH-SKC 172
C G +I+ L HH Y C D KQ+ + ++C
Sbjct: 348 CIGNAVLIHELSHHSYYCTCDTGYKQVNNRTRC 380
>SB_36107| Best HMM Match : zf-CCHC (HMM E-Value=0.00023)
Length = 425
Score = 26.6 bits (56), Expect = 9.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 110 GHHQYVCMLDINPKQLQHSKCYPSHFLFQTL 202
GH +CM IN K+ SK P+H + Q +
Sbjct: 236 GHISDICMSSINRKKSTPSKTKPTHCVEQEI 266
>SB_22726| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 238
Score = 26.6 bits (56), Expect = 9.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 110 GHHQYVCMLDINPKQLQHSKCYPSHFLFQTL 202
GH +CM IN K+ SK P+H + Q +
Sbjct: 143 GHISDICMSSINRKKSTASKTKPTHCVEQEI 173
>SB_17098| Best HMM Match : WD40 (HMM E-Value=8.9e-32)
Length = 808
Score = 26.6 bits (56), Expect = 9.1
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = -3
Query: 194 EIGSVRDSIYCAAAVWGLYQAYRRIDDDR 108
+IG + S+Y +A VWG+ + Y + D++
Sbjct: 289 KIGKIWSSLYHSACVWGV-EVYPEVSDNK 316
>SB_45147| Best HMM Match : zf-CCHC (HMM E-Value=0.0051)
Length = 522
Score = 26.6 bits (56), Expect = 9.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 110 GHHQYVCMLDINPKQLQHSKCYPSHFLFQTL 202
GH +CM IN K+ SK P+H + Q +
Sbjct: 27 GHISDICMSSINRKKSTPSKTKPTHCVEQEM 57
>SB_39617| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38)
Length = 1084
Score = 26.6 bits (56), Expect = 9.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 110 GHHQYVCMLDINPKQLQHSKCYPSHFLFQTL 202
GH +CM IN K+ SK P+H + Q +
Sbjct: 224 GHISDICMSSINRKKSTPSKTKPTHCVEQEI 254
>SB_23788| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38)
Length = 1122
Score = 26.6 bits (56), Expect = 9.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 110 GHHQYVCMLDINPKQLQHSKCYPSHFLFQTL 202
GH +CM IN K+ SK P+H + Q +
Sbjct: 258 GHISDICMSSINRKKSTPSKTKPTHCVEQEI 288
>SB_9257| Best HMM Match : RVT_1 (HMM E-Value=9.1e-32)
Length = 1086
Score = 26.6 bits (56), Expect = 9.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 110 GHHQYVCMLDINPKQLQHSKCYPSHFLFQTL 202
GH +CM IN K+ SK P+H + Q +
Sbjct: 225 GHISDICMSSINRKKSTPSKTKPTHCVEQEI 255
>SB_8223| Best HMM Match : RVT_1 (HMM E-Value=4e-27)
Length = 1307
Score = 26.6 bits (56), Expect = 9.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 110 GHHQYVCMLDINPKQLQHSKCYPSHFLFQTL 202
GH +CM IN K+ SK P+H + Q +
Sbjct: 143 GHISDICMSSINRKKSTASKTKPTHCVEQEI 173
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,233,681
Number of Sequences: 59808
Number of extensions: 261535
Number of successful extensions: 546
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 859323430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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