Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0914
         (442 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein pr...    23   3.6  
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    23   4.8  
AY035716-1|AAK61362.1|  136|Anopheles gambiae histone 3A protein.      23   6.4  

>AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein
           protein.
          Length = 942

 Score = 23.4 bits (48), Expect = 3.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 203 TEFEIGSVRDSIYCAAAVWGLYQAYR 126
           T FEIGS  D      +++GL QA R
Sbjct: 560 TGFEIGSKNDVCLLKKSLYGLKQAGR 585


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 370 EXMIRQGSIDDINAQQY 320
           E  + QGS+DDI  Q+Y
Sbjct: 949 EIPLLQGSMDDIGQQEY 965


>AY035716-1|AAK61362.1|  136|Anopheles gambiae histone 3A protein.
          Length = 136

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -3

Query: 248 LRFQSPITGLFPVLSTEFEIGSVRDSIYCA 159
           LRFQS   G     S  + +G   D+  CA
Sbjct: 83  LRFQSAAIGALQEASEAYLVGLFEDTNLCA 112


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 469,725
Number of Sequences: 2352
Number of extensions: 9098
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 36993357
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)