Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0914
(442 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024848-2|AAV34781.1| 245|Caenorhabditis elegans Hypothetical ... 91 4e-19
AC024848-1|AAV34780.1| 258|Caenorhabditis elegans Hypothetical ... 91 4e-19
L15188-11|AAA27954.4| 1226|Caenorhabditis elegans Hypothetical p... 69 2e-12
Z75525-7|CAH10769.1| 573|Caenorhabditis elegans Hypothetical pr... 27 4.6
Z75525-6|CAA99765.2| 623|Caenorhabditis elegans Hypothetical pr... 27 4.6
AF003925-1|AAB61344.1| 573|Caenorhabditis elegans mRNA capping ... 27 4.6
U61954-6|AAK29811.2| 459|Caenorhabditis elegans Sand endocytosi... 27 6.0
AF068713-21|AAC17804.2| 163|Caenorhabditis elegans Hypothetical... 27 8.0
AC006636-1|AAF39798.1| 163|Caenorhabditis elegans Hypothetical ... 27 8.0
>AC024848-2|AAV34781.1| 245|Caenorhabditis elegans Hypothetical
protein Y67D8A.2c protein.
Length = 245
Score = 90.6 bits (215), Expect = 4e-19
Identities = 40/82 (48%), Positives = 59/82 (71%)
Frame = -3
Query: 251 LLRFQSPITGLFPVLSTEFEIGSVRDSIYCAAAVWGLYQAYRRIDDDRGKSHELGQSTVK 72
+++ QS +GLFP S + ++G V+DSIYCA A W AY+R+DDDRG+ EL Q+ VK
Sbjct: 61 IVQCQSVTSGLFPRYSKDRDVGYVKDSIYCAMACWACSVAYKRLDDDRGRQTELRQTAVK 120
Query: 71 CMRGILECWIKQAPRVEAFKTR 6
MRGIL W++Q+ ++AFK++
Sbjct: 121 TMRGILFSWMQQSKNLDAFKSQ 142
>AC024848-1|AAV34780.1| 258|Caenorhabditis elegans Hypothetical
protein Y67D8A.2a protein.
Length = 258
Score = 90.6 bits (215), Expect = 4e-19
Identities = 40/82 (48%), Positives = 59/82 (71%)
Frame = -3
Query: 251 LLRFQSPITGLFPVLSTEFEIGSVRDSIYCAAAVWGLYQAYRRIDDDRGKSHELGQSTVK 72
+++ QS +GLFP S + ++G V+DSIYCA A W AY+R+DDDRG+ EL Q+ VK
Sbjct: 61 IVQCQSVTSGLFPRYSKDRDVGYVKDSIYCAMACWACSVAYKRLDDDRGRQTELRQTAVK 120
Query: 71 CMRGILECWIKQAPRVEAFKTR 6
MRGIL W++Q+ ++AFK++
Sbjct: 121 TMRGILFSWMQQSKNLDAFKSQ 142
>L15188-11|AAA27954.4| 1226|Caenorhabditis elegans Hypothetical
protein C14B9.8 protein.
Length = 1226
Score = 68.9 bits (161), Expect = 2e-12
Identities = 39/94 (41%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Frame = -3
Query: 275 LLCNCETQLLRFQSPITGLFPVLSTEFEIGSVRDSIYCAAAVWGLYQAYRR---IDDDRG 105
+L E + Q+PIT LF VRD++Y A A+W LY+AY + D+D
Sbjct: 14 ILFMVEQTICSHQNPITALFANQKDFPGHAWVRDNVYIAQALWALYRAYMKCADFDEDLT 73
Query: 104 KSHELGQSTVKCMRGILECWIKQAPRVEAFKTRQ 3
K+ ELG + VK M+ ILEC ++QA +VE FK Q
Sbjct: 74 KAKELGFTCVKMMQSILECLMRQAEKVELFKKYQ 107
>Z75525-7|CAH10769.1| 573|Caenorhabditis elegans Hypothetical
protein C03D6.3b protein.
Length = 573
Score = 27.5 bits (58), Expect = 4.6
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -2
Query: 255 ATSTIPKSHNRIVSCTI 205
AT+T+ K HN+I+ CT+
Sbjct: 510 ATATLKKYHNKIIECTL 526
>Z75525-6|CAA99765.2| 623|Caenorhabditis elegans Hypothetical
protein C03D6.3a protein.
Length = 623
Score = 27.5 bits (58), Expect = 4.6
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -2
Query: 255 ATSTIPKSHNRIVSCTI 205
AT+T+ K HN+I+ CT+
Sbjct: 522 ATATLKKYHNKIIECTL 538
>AF003925-1|AAB61344.1| 573|Caenorhabditis elegans mRNA capping
enzyme protein.
Length = 573
Score = 27.5 bits (58), Expect = 4.6
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -2
Query: 255 ATSTIPKSHNRIVSCTI 205
AT+T+ K HN+I+ CT+
Sbjct: 510 ATATLKKYHNKIIECTL 526
>U61954-6|AAK29811.2| 459|Caenorhabditis elegans Sand endocytosis
protein familyprotein 1 protein.
Length = 459
Score = 27.1 bits (57), Expect = 6.0
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 7 LVLNASTRGACLIQHSKMPLIHFTVLWPSSCDLPRSSSI 123
L LN S++ C+ SK+PLI W + ++ RSSS+
Sbjct: 354 LYLNHSSKQVCM-SASKIPLITRDERWIARSEMRRSSSL 391
>AF068713-21|AAC17804.2| 163|Caenorhabditis elegans Hypothetical
protein T24A6.17 protein.
Length = 163
Score = 26.6 bits (56), Expect = 8.0
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Frame = +2
Query: 56 KCLSYTLLCFGQVHVIYLGHHQYVC--MLDINPKQL--QHSKCYPSHFLFQTLLIVQETI 223
K ++YTL+ HV L ++VC +L P ++ ++K + +HF+ L + E +
Sbjct: 11 KIINYTLVQVVMEHVSCLIVSRFVCRVLLSAQPSEITKSYNKSFVNHFIPNNFLNILEVL 70
>AC006636-1|AAF39798.1| 163|Caenorhabditis elegans Hypothetical
protein F40C5.2 protein.
Length = 163
Score = 26.6 bits (56), Expect = 8.0
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Frame = +2
Query: 56 KCLSYTLLCFGQVHVIYLGHHQYVC--MLDINPKQL--QHSKCYPSHFLFQTLLIVQETI 223
K ++YTL+ HV L ++VC +L P ++ ++K + +HF+ L + E +
Sbjct: 11 KIINYTLVQVVMEHVSCLIVSRFVCRVLLSAQPSEITKSYNKSFVNHFIPNNFLNILEVL 70
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,003,543
Number of Sequences: 27780
Number of extensions: 203829
Number of successful extensions: 497
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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