Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0914
         (442 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g21840.1 68415.m02595 CHP-rich zinc finger protein, putative        29   1.8  
At2g13600.1 68415.m01499 pentatricopeptide (PPR) repeat-containi...    28   2.4  
At3g48080.1 68416.m05242 lipase class 3 family protein / disease...    28   3.2  
At5g66620.1 68418.m08397 LIM domain-containing protein contains ...    27   5.6  
At2g15320.1 68415.m01747 leucine-rich repeat family protein cont...    26   9.8  

>At2g21840.1 68415.m02595 CHP-rich zinc finger protein, putative
          Length = 746

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 18/41 (43%), Positives = 26/41 (63%)
 Frame = +2

Query: 62  LSYTLLCFGQVHVIYLGHHQYVCMLDINPKQLQHSKCYPSH 184
           LS+T +C+G VH  YL  H+  C LD+ P ++QH   +P H
Sbjct: 152 LSFTAICYGCVH-CYLFFHER-C-LDL-PTEIQH-PVHPMH 187


>At2g13600.1 68415.m01499 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 697

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 13/56 (23%), Positives = 25/56 (44%)
 Frame = -3

Query: 170 IYCAAAVWGLYQAYRRIDDDRGKSHELGQSTVKCMRGILECWIKQAPRVEAFKTRQ 3
           +Y  +A+  +Y     ++D +    E+G   V     ++ C+ +  P VEA    Q
Sbjct: 187 VYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQ 242


>At3g48080.1 68416.m05242 lipase class 3 family protein / disease
           resistance protein-related similar to disease resistance
           protein/lipase homolog EDS1 GI:4454567; contains Pfam
           profile PF01764: Lipase
          Length = 629

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 18/68 (26%), Positives = 29/68 (42%)
 Frame = -3

Query: 242 FQSPITGLFPVLSTEFEIGSVRDSIYCAAAVWGLYQAYRRIDDDRGKSHELGQSTVKCMR 63
           F S + GL   L  + +         C +  W        +++ +GK +E  Q   K + 
Sbjct: 522 FWSKVNGLNLGLQQDIQEILKNSGSECGSCFWA------EVEELKGKPYEEVQVRFKTLE 575

Query: 62  GILECWIK 39
           G+LE WIK
Sbjct: 576 GLLEGWIK 583


>At5g66620.1 68418.m08397 LIM domain-containing protein contains
           Pfam profile PF00412: LIM domain
          Length = 644

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +2

Query: 53  PKCLSYTLLCFGQVHVIYLGHHQYVCMLDINPKQLQHSKCYPSHF 187
           PKC S   L   + + + L   +++C+  +N   +   +C P HF
Sbjct: 376 PKCCSCERLEPRESNYVMLADGRWLCLECMNSAVMDSDECQPLHF 420


>At2g15320.1 68415.m01747 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611
          Length = 382

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
 Frame = -1

Query: 397 SNSFYASIPEXMIRQGSIDDINAQQ------YLKISNYEDTVRQLDICY 269
           SNSF  S+P+ + R  S++ I+           K  N    +RQLD+ Y
Sbjct: 133 SNSFSGSLPDSVTRLNSLESIDISHNSLTGPLPKTMNSLSNLRQLDLSY 181


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,213,032
Number of Sequences: 28952
Number of extensions: 180680
Number of successful extensions: 426
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 702840360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)