Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0913
(391 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 117 4e-27
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 1e-11
SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10) 33 0.063
SB_49134| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.0
SB_11774| Best HMM Match : M (HMM E-Value=8.5e-09) 29 1.4
SB_22177| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=4.5e-11) 27 4.1
SB_18972| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_3455| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_52340| Best HMM Match : FG-GAP (HMM E-Value=7.6e-19) 27 7.2
SB_30920| Best HMM Match : DUP (HMM E-Value=4.6) 27 7.2
SB_57573| Best HMM Match : 7tm_2 (HMM E-Value=3.7e-40) 27 7.2
SB_57406| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35) 26 9.5
SB_9496| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.5
SB_51220| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.5
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 117 bits (281), Expect = 4e-27
Identities = 55/78 (70%), Positives = 62/78 (79%)
Frame = -1
Query: 253 SPVVAQKYRMEMLYEGPHDDEAAIGIKSCDPEAPLMMYVSKMVPTSDKGRFYAFGRVFSG 74
SPVV+QKYR E+LYEGP DD A+GIK+CDPE MVPTSDKGRFYAFGRVFSG
Sbjct: 343 SPVVSQKYRCELLYEGPQDDAVALGIKACDPE---------MVPTSDKGRFYAFGRVFSG 393
Query: 73 KVVTGQKARIMGPNFTPG 20
KV +GQK RIMGP++ PG
Sbjct: 394 KVASGQKVRIMGPHYVPG 411
Score = 59.3 bits (137), Expect = 1e-09
Identities = 26/45 (57%), Positives = 35/45 (77%)
Frame = -2
Query: 390 DLLKKIGVTIKHEDSDKDGKALLKVVMRSWLPAGEALLQMIAIHL 256
+LL+K+ + + E+ + +GK L K VMR WLPAGEA+LQMIAIHL
Sbjct: 297 NLLEKLKIKLTVEERELEGKPLFKTVMRKWLPAGEAMLQMIAIHL 341
>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 809
Score = 65.7 bits (153), Expect = 1e-11
Identities = 27/68 (39%), Positives = 42/68 (61%)
Frame = -1
Query: 229 RMEMLYEGPHDDEAAIGIKSCDPEAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVVTGQKA 50
++E Y GP D + + +CDP+ LM++ +K P+ D F+ FGRV SG + GQ+
Sbjct: 316 QVEHNYTGPLDSDIVDAMNNCDPDGVLMVHTTKQYPSQDATAFHVFGRVMSGTLYAGQQV 375
Query: 49 RIMGPNFT 26
RI+G N+T
Sbjct: 376 RILGENYT 383
>SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10)
Length = 563
Score = 33.5 bits (73), Expect = 0.063
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -1
Query: 115 DKGRFYAFGRVFSGKVVTGQKARIMGPNFTP 23
+K F AF RV+SG + GQ+ I+GP P
Sbjct: 498 NKTHFMAFARVYSGTISRGQQLYILGPKHDP 528
>SB_49134| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1060
Score = 29.5 bits (63), Expect = 1.0
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = -1
Query: 238 QKYRMEMLYEGPHDDEAAI 182
+++++ YEGPHDDEA +
Sbjct: 548 ERHKINFKYEGPHDDEAIV 566
>SB_11774| Best HMM Match : M (HMM E-Value=8.5e-09)
Length = 1998
Score = 29.1 bits (62), Expect = 1.4
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -1
Query: 280 ASDDCHSFTSPVVAQKYRMEMLYEGPHDDEAAIGIKSCDPE 158
AS C T + Y M M E P++DE + +C+ E
Sbjct: 459 ASVKCEGSTLEDIISDYEMRMAQERPNEDEDEDALNACEEE 499
>SB_22177| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=4.5e-11)
Length = 1170
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +1
Query: 259 MNGNHLKQSFTSRQPRAHHNLQQSFAIFVGILMLDCDSNLLK 384
+N HL Q +TS + +A+ +L Q+ I+ L D +LLK
Sbjct: 580 VNIGHLMQRWTSDRLKANVSLSQTGRIYRSFLCYSKDKDLLK 621
>SB_18972| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 93
Score = 27.1 bits (57), Expect = 5.4
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 122 RHHLAHVHHQ-WGFRITALDTNGSFIIVGSL 211
RH + H H WGFR+T+L + I+GS+
Sbjct: 59 RHTILHFQHDTWGFRLTSLKKHP---IIGSI 86
>SB_3455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 587
Score = 27.1 bits (57), Expect = 5.4
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +2
Query: 113 VGGRHHLAHVHHQWG 157
+GGRH HHQWG
Sbjct: 321 IGGRHFPMGEHHQWG 335
>SB_52340| Best HMM Match : FG-GAP (HMM E-Value=7.6e-19)
Length = 616
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +3
Query: 153 GASGSQLLIPMAASSSWGPSYNISIRYFWATTGD 254
G SG Q ++ + + W RY WA +GD
Sbjct: 359 GLSGDQQMLLLQLAYPWVSYLPFCCRYIWALSGD 392
>SB_30920| Best HMM Match : DUP (HMM E-Value=4.6)
Length = 404
Score = 26.6 bits (56), Expect = 7.2
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 180 PMAASSSWGPSYNISIRYF 236
PM +SSW S++ S+RYF
Sbjct: 218 PMLTTSSWNCSHSPSLRYF 236
>SB_57573| Best HMM Match : 7tm_2 (HMM E-Value=3.7e-40)
Length = 956
Score = 26.6 bits (56), Expect = 7.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 79 RKRVQRRRNDLCRRSAPSCSRTSS 150
++RV+R + LC R+AP C S
Sbjct: 11 QQRVRRHSDQLCERTAPPCQDNMS 34
>SB_57406| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 107
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 80 ENASKGVETTFVGGRHHLAHVHHQWGFRITALDTNGSFI 196
+N++ G+ FV G+ + + + G I A TNGSFI
Sbjct: 17 KNSNPGLARIFVDGKDYSLN---ERGHNIVAFSTNGSFI 52
>SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)
Length = 1338
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 269 II*SRASPAGNQERITTFSKALPS 340
I+ R+SP G R+ T SKA PS
Sbjct: 338 ILPDRSSPTGKPSRVPTPSKATPS 361
>SB_9496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2309
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 79 RKRVQRRRNDLCRRSAPSCSRTSSVGLQDH 168
++ V+R+ + LC R+AP C S+ +DH
Sbjct: 1089 QQHVRRQADQLCERTAPPCQ--DSMSHRDH 1116
>SB_51220| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1601
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +3
Query: 45 MRAFCPVTTLPEKTRPKA*KRPLSEVGTILLTYIISGASGSQLLI 179
M + CP+ P K +A K L + ILL + + + + L++
Sbjct: 1521 MSSSCPLDATPTKISARADKSTLRRIFVILLVFSLKNCAPTALVL 1565
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,699,994
Number of Sequences: 59808
Number of extensions: 286357
Number of successful extensions: 847
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 681761575
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -