Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0913
(391 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 151 1e-37
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 151 1e-37
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 63 6e-11
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 63 6e-11
Z81493-4|CAB04041.1| 165|Caenorhabditis elegans Hypothetical pr... 27 3.6
AL034488-6|CAA22450.2| 467|Caenorhabditis elegans Hypothetical ... 27 3.6
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 27 4.7
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 27 4.7
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 27 4.7
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 27 4.7
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 27 4.7
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 27 4.7
Z82269-1|CAB05205.2| 651|Caenorhabditis elegans Hypothetical pr... 27 6.2
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 151 bits (367), Expect = 1e-37
Identities = 66/78 (84%), Positives = 70/78 (89%)
Frame = -1
Query: 253 SPVVAQKYRMEMLYEGPHDDEAAIGIKSCDPEAPLMMYVSKMVPTSDKGRFYAFGRVFSG 74
SPV AQKYRMEMLYEGPHDDEAA+ IK+CDP PLMMY+SKMVPTSDKGRFYAFGRVFSG
Sbjct: 354 SPVTAQKYRMEMLYEGPHDDEAAVAIKTCDPNGPLMMYISKMVPTSDKGRFYAFGRVFSG 413
Query: 73 KVVTGQKARIMGPNFTPG 20
KV TG KARI GPN+ PG
Sbjct: 414 KVATGMKARIQGPNYVPG 431
Score = 59.3 bits (137), Expect = 1e-09
Identities = 23/44 (52%), Positives = 35/44 (79%)
Frame = -2
Query: 387 LLKKIGVTIKHEDSDKDGKALLKVVMRSWLPAGEALLQMIAIHL 256
L++K+G+ + +++ D +GK L+KV MR WLPAG+ +LQMIA HL
Sbjct: 309 LVEKLGIKLANDEKDLEGKPLMKVFMRKWLPAGDTMLQMIAFHL 352
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 151 bits (367), Expect = 1e-37
Identities = 66/78 (84%), Positives = 70/78 (89%)
Frame = -1
Query: 253 SPVVAQKYRMEMLYEGPHDDEAAIGIKSCDPEAPLMMYVSKMVPTSDKGRFYAFGRVFSG 74
SPV AQKYRMEMLYEGPHDDEAA+ IK+CDP PLMMY+SKMVPTSDKGRFYAFGRVFSG
Sbjct: 354 SPVTAQKYRMEMLYEGPHDDEAAVAIKTCDPNGPLMMYISKMVPTSDKGRFYAFGRVFSG 413
Query: 73 KVVTGQKARIMGPNFTPG 20
KV TG KARI GPN+ PG
Sbjct: 414 KVATGMKARIQGPNYVPG 431
Score = 59.3 bits (137), Expect = 1e-09
Identities = 23/44 (52%), Positives = 35/44 (79%)
Frame = -2
Query: 387 LLKKIGVTIKHEDSDKDGKALLKVVMRSWLPAGEALLQMIAIHL 256
L++K+G+ + +++ D +GK L+KV MR WLPAG+ +LQMIA HL
Sbjct: 309 LVEKLGIKLANDEKDLEGKPLMKVFMRKWLPAGDTMLQMIAFHL 352
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 63.3 bits (147), Expect = 6e-11
Identities = 27/76 (35%), Positives = 44/76 (57%)
Frame = -1
Query: 253 SPVVAQKYRMEMLYEGPHDDEAAIGIKSCDPEAPLMMYVSKMVPTSDKGRFYAFGRVFSG 74
SP+ K ++E Y GP D + A ++ C+ E PLM++ +K P D +F+ FGRV SG
Sbjct: 444 SPLENAKTKIEQTYLGPADSQLAQEMQKCNAEGPLMVHTTKNYPVDDATQFHVFGRVMSG 503
Query: 73 KVVTGQKARIMGPNFT 26
+ R++G N++
Sbjct: 504 TLEANTDVRVLGENYS 519
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 63.3 bits (147), Expect = 6e-11
Identities = 27/76 (35%), Positives = 44/76 (57%)
Frame = -1
Query: 253 SPVVAQKYRMEMLYEGPHDDEAAIGIKSCDPEAPLMMYVSKMVPTSDKGRFYAFGRVFSG 74
SP+ K ++E Y GP D + A ++ C+ E PLM++ +K P D +F+ FGRV SG
Sbjct: 319 SPLENAKTKIEQTYLGPADSQLAQEMQKCNAEGPLMVHTTKNYPVDDATQFHVFGRVMSG 378
Query: 73 KVVTGQKARIMGPNFT 26
+ R++G N++
Sbjct: 379 TLEANTDVRVLGENYS 394
>Z81493-4|CAB04041.1| 165|Caenorhabditis elegans Hypothetical
protein F01D5.5 protein.
Length = 165
Score = 27.5 bits (58), Expect = 3.6
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = +3
Query: 30 KFGPMMRAFCPVT--TLPEKTRPK 95
K+ PM++AFCPVT P T P+
Sbjct: 72 KYTPMLKAFCPVTCNMCPGATTPE 95
>AL034488-6|CAA22450.2| 467|Caenorhabditis elegans Hypothetical
protein Y54G11A.7 protein.
Length = 467
Score = 27.5 bits (58), Expect = 3.6
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +2
Query: 35 WSHDASFLSGNNLARENASKGVETTFVGGRHHLAHVHHQWGF 160
+SHDA F +GN + ++NA + V + +++H + F
Sbjct: 147 FSHDAHFFNGNQIGKKNAIEKVIHKWNADLPCYSYLHGMYAF 188
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 27.1 bits (57), Expect = 4.7
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3
Query: 237 WATTGDVNEWQSSEAELHQQATKSASQPSAKLC 335
W TTG E Q + Q ++ + SAK+C
Sbjct: 536 WTTTGTTLEMQGTRVTRTQYGFRTLQESSAKMC 568
>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
protein 89, isoform e protein.
Length = 5992
Score = 27.1 bits (57), Expect = 4.7
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3
Query: 237 WATTGDVNEWQSSEAELHQQATKSASQPSAKLC 335
W TTG E Q + Q ++ + SAK+C
Sbjct: 536 WTTTGTTLEMQGTRVTRTQYGFRTLQESSAKMC 568
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 27.1 bits (57), Expect = 4.7
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3
Query: 237 WATTGDVNEWQSSEAELHQQATKSASQPSAKLC 335
W TTG E Q + Q ++ + SAK+C
Sbjct: 536 WTTTGTTLEMQGTRVTRTQYGFRTLQESSAKMC 568
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 27.1 bits (57), Expect = 4.7
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3
Query: 237 WATTGDVNEWQSSEAELHQQATKSASQPSAKLC 335
W TTG E Q + Q ++ + SAK+C
Sbjct: 536 WTTTGTTLEMQGTRVTRTQYGFRTLQESSAKMC 568
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 27.1 bits (57), Expect = 4.7
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3
Query: 237 WATTGDVNEWQSSEAELHQQATKSASQPSAKLC 335
W TTG E Q + Q ++ + SAK+C
Sbjct: 536 WTTTGTTLEMQGTRVTRTQYGFRTLQESSAKMC 568
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 27.1 bits (57), Expect = 4.7
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3
Query: 237 WATTGDVNEWQSSEAELHQQATKSASQPSAKLC 335
W TTG E Q + Q ++ + SAK+C
Sbjct: 536 WTTTGTTLEMQGTRVTRTQYGFRTLQESSAKMC 568
>Z82269-1|CAB05205.2| 651|Caenorhabditis elegans Hypothetical
protein F52G2.3 protein.
Length = 651
Score = 26.6 bits (56), Expect = 6.2
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +1
Query: 76 QRKRVQRRRNDLCRRSAPSCSRTSSVGLQDHSS*YQWQLHHRGVPHITSPYDIS 237
Q+KR Q+ +R A S + + Q HS Q +H P ++S IS
Sbjct: 535 QKKRAQQEHFAQQQRPAGSSNSYQTENAQQHSMSNNMQYYHSQAPPVSSRSSIS 588
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,950,889
Number of Sequences: 27780
Number of extensions: 209246
Number of successful extensions: 634
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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