Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0913
         (391 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    25   0.31 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    25   0.31 
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            21   3.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              20   8.7  

>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 25.0 bits (52), Expect = 0.31
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +3

Query: 153 GASGSQLLIPMAASSSWGPSYNISIRYFWATTGDVNEWQSSEAELHQQA 299
           G+ GSQL    A  +   PSY++ +    A+  D +   SSE  +H Q+
Sbjct: 92  GSDGSQL----AMRNDRSPSYSMQVPQQGASIDDSDPDPSSEPTVHSQS 136


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 25.0 bits (52), Expect = 0.31
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +3

Query: 153 GASGSQLLIPMAASSSWGPSYNISIRYFWATTGDVNEWQSSEAELHQQA 299
           G+ GSQL    A  +   PSY++ +    A+  D +   SSE  +H Q+
Sbjct: 540 GSDGSQL----AMRNDRSPSYSMQVPQQGASIDDSDPDPSSEPTVHSQS 584


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 9/44 (20%), Positives = 21/44 (47%)
 Frame = +1

Query: 67  QPCQRKRVQRRRNDLCRRSAPSCSRTSSVGLQDHSS*YQWQLHH 198
           Q   + + +RR+ +L +      +   S+  +DH+    W ++H
Sbjct: 1   QKVHQLKKKRRKKNLNQNQMMIWALDCSIKPKDHNGSIYWSMYH 44


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 375 IGVTIKHEDSDKDGK 331
           +G  I ++D+D DGK
Sbjct: 276 LGHMISYDDTDGDGK 290


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,957
Number of Sequences: 438
Number of extensions: 2619
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9514659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)