Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0911
         (773 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    29   0.74 
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    29   0.98 
SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit |Sch...    27   3.9  
SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|c...    26   5.2  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     26   6.9  
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc...    26   6.9  

>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 29.1 bits (62), Expect = 0.74
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = -3

Query: 171 PQRSSDRSASSIAPLGSSVLKLPMNATPMDLELYP*VCAPTCSQPEPSYTLPL 13
           P+ S+++   S++ L SS    P +AT     LYP   APT   P  S + PL
Sbjct: 219 PRESTEKPLLSVSALSSSSHLQPTSATSSSSRLYPSRPAPT--PPASSSSSPL 269


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 28.7 bits (61), Expect = 0.98
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
 Frame = -3

Query: 222 CRCATTR*SPARWPRSTPQR-------SSDRSASSIAPLGSSVLKLPM-NATPMDLELYP 67
           CR ATT   P      T Q        S+ R A++     + + ++P  N  P D +   
Sbjct: 532 CRLATTHVEPTEVTAFTTQSVLASSAPSAGRPAAAQISRPAQLFRIPSTNPPPFDGD--- 588

Query: 66  *VCAPTCSQPEPSY 25
            VC P C+ P P+Y
Sbjct: 589 -VCPPACNTPPPNY 601


>SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 311

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -3

Query: 333 YAVIMLRVLDGVHVLQPLRPASYLV 259
           YAV +L +LD +HV+   + ASY++
Sbjct: 86  YAVQVLAMLDSLHVVDKDKVASYII 110


>SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 222

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 382 SYSIYA*YNLNYL*IKIKTGCFLITLFTLVRIL 480
           SYS YA Y+ N + IKI   C  + L T + +L
Sbjct: 7   SYSFYAAYHSNPVNIKIHQVCIPLLLLTALVLL 39


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 446 F*LHCLPWFEYLSSVSLTFGY 508
           F LHCLPW  +L  V    G+
Sbjct: 397 FLLHCLPWTPFLVQVVAISGF 417


>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 475 ILKLSFVDIWICLETDFHIKLFLDF*VSFPTEQ 573
           I+K+SF  ++ICL+   ++ L   F  SF  ++
Sbjct: 259 IVKISFEPLYICLQVHSYLGLLSSFRSSFERDR 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,937,900
Number of Sequences: 5004
Number of extensions: 59115
Number of successful extensions: 145
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)