Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0911
         (773 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1074 + 30168065-30168577                                         32   0.58 
05_03_0626 - 16335816-16335917,16336331-16336558,16336694-163369...    31   1.0  
05_03_0600 + 16031952-16032614                                         31   1.0  
08_01_0706 - 6235817-6235988,6236028-6236338,6236421-6236627,623...    30   2.3  
09_03_0040 + 11816056-11819069,11819837-11820428                       29   4.1  
08_02_1288 + 25902264-25902431,25902506-25903090                       29   4.1  
05_07_0095 - 27659944-27660795,27660900-27661172,27661280-276613...    28   9.5  
01_07_0382 + 43188478-43190919                                         28   9.5  

>03_05_1074 + 30168065-30168577
          Length = 170

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = -2

Query: 178 LHAAAQQRPQRLQHRAARLVRVEVADECDSDGPRVVPVGVRADVQPAGA 32
           L AA ++RP + +  AA  VR   A   D DGP V P    +   P  A
Sbjct: 95  LPAAMRRRPLQAEEMAALAVRASAALVGDHDGPLVFPEAAASAADPRAA 143


>05_03_0626 -
           16335816-16335917,16336331-16336558,16336694-16336973,
           16337596-16338560
          Length = 524

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = +2

Query: 134 AMLEALRSLLRCGVERGHLAGDYRVVAHRQLIASESP-GRKPTTRYDAGLSGWRTWTPSR 310
           AM+  LR  L CGV+R  + GD  V+   +L+  E P  R P   ++  LS  R +    
Sbjct: 206 AMMRGLRLALSCGVDRLVVEGDDLVLV--ELLRGEKPHTRIPAAMHEEILSLLRRFAEVE 263

Query: 311 TRNIITAYRIAPFLLC 358
            R+I          LC
Sbjct: 264 VRHIYREGNSVAHTLC 279


>05_03_0600 + 16031952-16032614
          Length = 220

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 23/75 (30%), Positives = 35/75 (46%)
 Frame = +2

Query: 134 AMLEALRSLLRCGVERGHLAGDYRVVAHRQLIASESPGRKPTTRYDAGLSGWRTWTPSRT 313
           A+++ L+  L+C VER  + GD  V+  + L   E+  R P   +D  LS  R +T    
Sbjct: 106 ALIKGLKLALKCFVERIVVEGDDLVLV-QLLRGEETQTRIPAAMHDEILSLLRRFTEFEV 164

Query: 314 RNIITAYRIAPFLLC 358
           R+I          LC
Sbjct: 165 RHIYREGNSVAHTLC 179


>08_01_0706 -
           6235817-6235988,6236028-6236338,6236421-6236627,
           6236718-6236889,6236994-6237249,6238015-6238073,
           6238693-6238782,6238869-6239013,6239598-6239712,
           6240690-6240701
          Length = 512

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
 Frame = +2

Query: 5   VGGNGKVYEGSGWLHVGAHTYGYNSRSIGVAFIGNFNTDEPS----GAMLEALRSLLRCG 172
           +GG G+++ G  W       + Y S S  +A  G  + ++PS     + L ++ S++ C 
Sbjct: 395 IGGTGRIWLGRAWRPYSTVVFAYTSMSDIIASEGWNDWNDPSRDQYASSLYSV-SIVTCM 453

Query: 173 VERGHLAGDYR 205
            +R    G+YR
Sbjct: 454 TKRTVFYGEYR 464


>09_03_0040 + 11816056-11819069,11819837-11820428
          Length = 1201

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = -3

Query: 165 RSSDRSASSIAPLGSSVLKLPMNATPMDL 79
           R   R+AS++A  G+S+ +LP+ ATP+ +
Sbjct: 301 RDCGRAASTLAESGASMEELPLEATPISV 329


>08_02_1288 + 25902264-25902431,25902506-25903090
          Length = 250

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 582 YLEVLQFVPHLRSFCISMVSHTTRTCLL 665
           Y+  L++V  L +F +S +SHTT  C L
Sbjct: 115 YMMALKYVTLLLAFLLSFLSHTTAICTL 142


>05_07_0095 -
           27659944-27660795,27660900-27661172,27661280-27661354,
           27661683-27661837,27661935-27662051,27662148-27662487
          Length = 603

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 189 RWPRSTPQRSSDRSASSIAPLGSSVLKLPMNATPMDLELYP 67
           RW RST   SS   A S++   ++ L      +PMD E+ P
Sbjct: 16  RWRRSTSSSSSSPLALSLSSSSAAALSDDDPGSPMDPEMPP 56


>01_07_0382 + 43188478-43190919
          Length = 813

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +2

Query: 14  NGKVYEGSGWLHVGAHTYGYNSR 82
           +G V EG  W HV  H YG   R
Sbjct: 555 SGLVIEGKHWFHVMGHGYGLTPR 577


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,417,771
Number of Sequences: 37544
Number of extensions: 407289
Number of successful extensions: 1329
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1328
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)