Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0911
(773 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52816| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.26
SB_55186| Best HMM Match : TPR_2 (HMM E-Value=0.91) 30 1.8
SB_31782| Best HMM Match : FH2 (HMM E-Value=1.2e-08) 30 2.4
SB_21674| Best HMM Match : LIM (HMM E-Value=0.44) 30 2.4
SB_56579| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_25592| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_147| Best HMM Match : LepA_C (HMM E-Value=0.73) 29 5.5
SB_24295| Best HMM Match : DUF1070 (HMM E-Value=3.9) 29 5.5
SB_32544| Best HMM Match : Extensin_2 (HMM E-Value=0.0062) 28 9.6
SB_12717| Best HMM Match : CheR (HMM E-Value=5.6) 28 9.6
>SB_52816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1622
Score = 33.1 bits (72), Expect = 0.26
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 10/89 (11%)
Frame = -2
Query: 739 HWSKDVFLMDL--------LTDISICAAQRQCYKRHVRVV*ETIEIQKDLKCGTNCNTSR 584
HW +D+FL+D+ L SIC + ++RH+ VV + + + S
Sbjct: 387 HWKQDLFLLDMPLPVQENDLIKGSICLKRNPDFRRHLSVVFDFVILHPTNHRDLEVMHSV 446
Query: 583 *H*FVLWETKLKSL--EIILYESPSQDIS 503
FV+W + L+++ ++ S QD+S
Sbjct: 447 EKKFVIWRSVLRAVTPSVVAQPSSCQDVS 475
>SB_55186| Best HMM Match : TPR_2 (HMM E-Value=0.91)
Length = 571
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -2
Query: 292 SPATQASVVSGCRLPAGALRGNELSVRHDAVVPREVAALHAAAQQRPQ 149
SP T AS +G P G+ G S + V PR+ A +QRP+
Sbjct: 517 SPKTPASPKAGLSSPPGSPGGGATSAPSNVVPPRQQQPAAAKKKQRPK 564
>SB_31782| Best HMM Match : FH2 (HMM E-Value=1.2e-08)
Length = 1052
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = -3
Query: 171 PQRSSDRSASSIAPLGSSVLKLPMNATPMDLELYP*VCAPTCSQPEPSYTLPLPPTR 1
P + +S+++ PL ++ LP N P+ YP PT P P+ PLP R
Sbjct: 607 PYATRLKSSTNRYPLPTNRYPLPTNRYPLPTNRYP---LPTNRYPIPTNRYPLPKNR 660
>SB_21674| Best HMM Match : LIM (HMM E-Value=0.44)
Length = 885
Score = 29.9 bits (64), Expect = 2.4
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Frame = -2
Query: 304 WSPR---SPATQASVVSGCRLPAGALRGNELSVRHDAVVPREVAALHAAAQQRPQRLQHR 134
W P+ S A + S S R +G R + S R + V A + RP L HR
Sbjct: 555 WGPKKSGSLAREPSTASAVR-SSGRNRCKDASSRPRRIGEDRVGAEKPIEEWRPPELGHR 613
Query: 133 AARLVRVEVADEC 95
R V + DEC
Sbjct: 614 LDRPAEVIIIDEC 626
>SB_56579| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1042
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = -2
Query: 250 PAGALRGNELSVRHDAVVPREVAALHAAAQQRPQRLQHRAARLVRVEVADEC 95
P A G + + H +P E + RP L H+ RL V + DEC
Sbjct: 704 PRLACAGRDQTYHHSLCIPAE----KPVEEWRPSELGHKLDRLAEVLIIDEC 751
>SB_25592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 730
Score = 29.5 bits (63), Expect = 3.2
Identities = 19/70 (27%), Positives = 26/70 (37%)
Frame = -2
Query: 304 WSPRSPATQASVVSGCRLPAGALRGNELSVRHDAVVPREVAALHAAAQQRPQRLQHRAAR 125
W P + A S G ++S R + V A + RP L H+ R
Sbjct: 288 WGPEKSGSLAKEPSTAPSLRGRNLCKDVSSRPRRIGEDRVGAEKPIEEWRPSELGHKLDR 347
Query: 124 LVRVEVADEC 95
L V + DEC
Sbjct: 348 LAEVIIIDEC 357
>SB_147| Best HMM Match : LepA_C (HMM E-Value=0.73)
Length = 611
Score = 28.7 bits (61), Expect = 5.5
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = -3
Query: 159 SDRSASSIAPLGSSVLKLPMNATPMDLELYP*VCAPTCSQPEPSYTLPLPPT 4
+ R +SS + L SSV + +TP L P + + S P PS + LPPT
Sbjct: 276 ASRHSSSSSSL-SSVPSSFLASTPRAATLSPLSSSSSSSSPRPSRDIELPPT 326
>SB_24295| Best HMM Match : DUF1070 (HMM E-Value=3.9)
Length = 745
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = -2
Query: 226 ELSVRHDAVVPREVAALHAAAQQRPQRLQHRAARLVRVEVADECDSD 86
++S R + V A + RP L H+ RL V + DEC D
Sbjct: 613 DVSSRPSRIGEDRVGAEKPIEEWRPSELGHKLDRLAEVIIIDECCKD 659
>SB_32544| Best HMM Match : Extensin_2 (HMM E-Value=0.0062)
Length = 282
Score = 27.9 bits (59), Expect = 9.6
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -3
Query: 180 RSTPQRSSDRSASSI-APLGSSVLKLPMNATPMDLELYP*VCAPTCSQPEPSYTLPLPP 7
+STP+ SS + + + +PL S L + + P AP S P+PS + PP
Sbjct: 147 KSTPRPSSPQPSFQVRSPLFKSAAFLSSPQPSLRVRTPPFKSAPLFSSPQPSLQVRSPP 205
>SB_12717| Best HMM Match : CheR (HMM E-Value=5.6)
Length = 685
Score = 27.9 bits (59), Expect = 9.6
Identities = 17/55 (30%), Positives = 22/55 (40%)
Frame = -2
Query: 259 CRLPAGALRGNELSVRHDAVVPREVAALHAAAQQRPQRLQHRAARLVRVEVADEC 95
C P A + H+ VP E + RP L H+ RL V + DEC
Sbjct: 570 CNNPRLACAERAQTYHHNLFVPAE----KPIEEWRPSELGHKLDRLAEVIIIDEC 620
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,659,751
Number of Sequences: 59808
Number of extensions: 473531
Number of successful extensions: 1998
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1997
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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