Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0911
         (773 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039053-5|AAC25875.2|  293|Caenorhabditis elegans Serpentine re...    30   1.6  
AF025453-4|ABC48262.1|  905|Caenorhabditis elegans Hypothetical ...    28   6.4  
AF025453-3|AAM98053.2|  828|Caenorhabditis elegans Hypothetical ...    28   6.4  

>AF039053-5|AAC25875.2|  293|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 23 protein.
          Length = 293

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 494 LTFGYVLRRTFI*NYF*TFEFRFPQNKLMLS*GIAVCST 610
           L FGY + +     YF  FE  FP+N L +   I  CS+
Sbjct: 133 LIFGYAIFQYSFIYYFCNFELTFPRNCLTIGCSINACSS 171


>AF025453-4|ABC48262.1|  905|Caenorhabditis elegans Hypothetical
           protein C08F1.5b protein.
          Length = 905

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 534 FYMKVRLKTYPNVNETELKYSNQGKQCN 451
           F M + LK  PNV E E  +SN  K C+
Sbjct: 778 FTMLLTLKDIPNVQEGESYFSNTEKHCD 805


>AF025453-3|AAM98053.2|  828|Caenorhabditis elegans Hypothetical
           protein C08F1.5a protein.
          Length = 828

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 534 FYMKVRLKTYPNVNETELKYSNQGKQCN 451
           F M + LK  PNV E E  +SN  K C+
Sbjct: 701 FTMLLTLKDIPNVQEGESYFSNTEKHCD 728


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,483,216
Number of Sequences: 27780
Number of extensions: 343097
Number of successful extensions: 1024
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)