Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0911
         (773 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    25   1.0  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   3.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   3.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   7.3  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   9.6  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +1

Query: 226 HCL*EPRPEAYNQIRRWPEWLEN 294
           H L + +PE Y  ++ W ++++N
Sbjct: 262 HTLTKDQPETYELVKEWRDFVDN 284


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = -3

Query: 693 LFVPLSVNATRGMYVWCERPLKYKKTLSVEQ 601
           +  PL++N  R  ++   +P KY+    +E+
Sbjct: 519 IVAPLTINPERAEFIEFSKPFKYQGITILEK 549


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 12/72 (16%)
 Frame = -2

Query: 220 SVRHDAVVPREVAALHAAAQQRPQ-RLQHRAA--------RLVRVEVA---DECDSDGPR 77
           +VR   V  RE A + AA QQ    R Q +A         RL+   V    D CD    +
Sbjct: 137 AVRFGRVPKREKARILAAMQQSSHSRSQEKAVAAELEDEQRLLATVVQAHLDTCDFTRDK 196

Query: 76  VVPVGVRADVQP 41
           V P+ VRA   P
Sbjct: 197 VAPILVRARETP 208



 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 219 RCATTR*SPARWPRST 172
           +CAT+  S  RWP ++
Sbjct: 770 QCATSNYSTTRWPATS 785


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +2

Query: 653  YMPLVALTLSG 685
            Y+PLVA TLSG
Sbjct: 994  YLPLVAATLSG 1004


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -2

Query: 697 ISICAAQRQCYKRH 656
           I++C   R+C +RH
Sbjct: 101 IAVCVCMRKCPRRH 114


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 670 IDAERHK*RYPLADPLKRHLWTNV 741
           + AERHK  YP  D     ++ N+
Sbjct: 206 VPAERHKKYYPCCDEPYPDIFFNI 229


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,458
Number of Sequences: 438
Number of extensions: 4114
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)