Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0911
         (773 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g03090.2 68414.m00284 methylcrotonyl-CoA carboxylase alpha ch...    31   0.64 
At1g03090.1 68414.m00283 methylcrotonyl-CoA carboxylase alpha ch...    31   0.64 
At2g17220.2 68415.m01989 protein kinase, putative similar to pro...    31   1.1  
At2g17220.1 68415.m01988 protein kinase, putative similar to pro...    31   1.1  
At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein ...    30   2.0  
At5g55930.1 68418.m06976 oligopeptide transporter OPT family pro...    29   4.5  
At3g26085.1 68416.m03248 CAAX amino terminal protease family pro...    28   7.9  
At1g60070.1 68414.m06767 gamma-adaptin, putative similar to gamm...    28   7.9  

>At1g03090.2 68414.m00284 methylcrotonyl-CoA carboxylase alpha
           chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase
           1 (MCCA) nearly identical to SP|Q42523
           Methylcrotonyl-CoA carboxylase alpha chain,
           mitochondrial precursor (EC 6.4.1.4)
           (3-Methylcrotonyl-CoA carboxylase 1) (MCCase alpha
           subunit) (3-methylcrotonyl-CoA:carbon dioxide ligase
           alpha subunit) {Arabidopsis thaliana}
          Length = 734

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -2

Query: 154 PQRLQHRAARLVRVEVADECDSDGPRVVPVGVRADVQPAGA 32
           P R+ H A + + +E  +EC+  G  ++ +GVR   QP G+
Sbjct: 539 PFRVHHEAKQTIELEWNNECEGTGSNLISLGVR--YQPDGS 577


>At1g03090.1 68414.m00283 methylcrotonyl-CoA carboxylase alpha
           chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase
           1 (MCCA) nearly identical to SP|Q42523
           Methylcrotonyl-CoA carboxylase alpha chain,
           mitochondrial precursor (EC 6.4.1.4)
           (3-Methylcrotonyl-CoA carboxylase 1) (MCCase alpha
           subunit) (3-methylcrotonyl-CoA:carbon dioxide ligase
           alpha subunit) {Arabidopsis thaliana}
          Length = 714

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -2

Query: 154 PQRLQHRAARLVRVEVADECDSDGPRVVPVGVRADVQPAGA 32
           P R+ H A + + +E  +EC+  G  ++ +GVR   QP G+
Sbjct: 519 PFRVHHEAKQTIELEWNNECEGTGSNLISLGVR--YQPDGS 557


>At2g17220.2 68415.m01989 protein kinase, putative similar to
           protein kinase APK1A [Arabidopsis thaliana]
           Swiss-Prot:Q06548
          Length = 413

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
 Frame = -3

Query: 351 KNGAMRYAVIMLRVLDGVHVLQPLRPASY--LVVGFRPGLSEAMSCRCATTR*SPARWPR 178
           K+    + V++  +L G+H L P RP     L    +P LSE    R         ++P 
Sbjct: 276 KSDVYGFGVVLAEILTGLHALDPTRPTGQHNLTEWIKPHLSERRKLRSIMDPRLEGKYPF 335

Query: 177 STPQRSSDRSASSIAP 130
            +  R +  +   + P
Sbjct: 336 KSAFRVAQLALKCLGP 351


>At2g17220.1 68415.m01988 protein kinase, putative similar to
           protein kinase APK1A [Arabidopsis thaliana]
           Swiss-Prot:Q06548
          Length = 414

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
 Frame = -3

Query: 351 KNGAMRYAVIMLRVLDGVHVLQPLRPASY--LVVGFRPGLSEAMSCRCATTR*SPARWPR 178
           K+    + V++  +L G+H L P RP     L    +P LSE    R         ++P 
Sbjct: 277 KSDVYGFGVVLAEILTGLHALDPTRPTGQHNLTEWIKPHLSERRKLRSIMDPRLEGKYPF 336

Query: 177 STPQRSSDRSASSIAP 130
            +  R +  +   + P
Sbjct: 337 KSAFRVAQLALKCLGP 352


>At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein
            contains Pfam domain, PF00642: Zinc finger
            C-x8-C-x5-C-x3-H type (and similar)
          Length = 1230

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = -2

Query: 283  TQASVVSGCRLPAGALRGNELSVRHDAVVPREVAALHAAAQQRPQRLQHRAARLVRVEVA 104
            T + VV+G +LP   ++ N + +   +V P E+AA HA A Q     Q   A      VA
Sbjct: 919  TSSVVVTGGQLPQ-VIQQNTVVLAAPSVKPIELAADHATATQTSDNTQVAQASGWPAIVA 977

Query: 103  --DECD 92
              DECD
Sbjct: 978  DPDECD 983


>At5g55930.1 68418.m06976 oligopeptide transporter OPT family
           protein similar to SP|P40900 Sexual differentiation
           process protein isp4 {Schizosaccharomyces pombe},
           oligopeptide transporter Opt1p [Candida albicans]
           GI:2367386; contains Pfam profile PF03169: OPT
           oligopeptide transporter protein
          Length = 755

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 17  GKVYEGSGWLHVGAHTYGYNSRSIGVAFIGNF 112
           G +Y G    +V   TYGY S S  + F+G+F
Sbjct: 501 GYLYPGKPLANVAFKTYGYISMSQALYFVGDF 532


>At3g26085.1 68416.m03248 CAAX amino terminal protease family
           protein contains Pfam profile PF02517 CAAX amino
           terminal protease family protein
          Length = 293

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 294 VLQPLRPASYLVVGFRPGLSEAMSCRCA 211
           +L  L P  YLVV   PG+SE +  R A
Sbjct: 185 ILTSLEPLDYLVVAMLPGISEELLFRGA 212


>At1g60070.1 68414.m06767 gamma-adaptin, putative similar to
           gamma-adaptin GI:2765190 from [Homo sapiens]; contains
           Pfam profiles PF01602: Adaptin N terminal region,
           PF02883: Adaptin C-terminal domain
          Length = 867

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -2

Query: 265 SGCRLP--AGALRGNELSVRHDAVVPREVAALHAAAQQRPQRLQHR 134
           SG RL     A+R ++ +    AVV +E AA+ A+  +  Q  +HR
Sbjct: 6   SGTRLSDMIRAIRASKTAAEERAVVRKECAAIRASINENDQDYRHR 51


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,427,649
Number of Sequences: 28952
Number of extensions: 312744
Number of successful extensions: 874
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)