Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0910
         (744 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY157938-1|AAN35200.1| 1751|Caenorhabditis elegans ANC-1 protein.      33   0.28 
AY126454-1|AAM95163.1|  555|Caenorhabditis elegans nesprin-like ...    33   0.28 
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl...    33   0.28 

>AY157938-1|AAN35200.1| 1751|Caenorhabditis elegans ANC-1 protein.
          Length = 1751

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = -3

Query: 730 DNFNEVYNAMCSQSIQYSTDTRSYRHHD*NVIYFAMYNGSYPEITQSNCF-IIEMRKTRL 554
           +  NE+Y+       Q  T  R+   HD   I + +  G Y      +C+  +     ++
Sbjct: 763 ERLNEIYDNHSRD--QVDTPNRNLIRHDMGTIIYGLQAGQYANFVDLSCYAFVYDEYNQV 820

Query: 553 PISMTDNII 527
           P+++T+N++
Sbjct: 821 PVNLTENVL 829


>AY126454-1|AAM95163.1|  555|Caenorhabditis elegans nesprin-like
           protein protein.
          Length = 555

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = -3

Query: 730 DNFNEVYNAMCSQSIQYSTDTRSYRHHD*NVIYFAMYNGSYPEITQSNCF-IIEMRKTRL 554
           +  NE+Y+       Q  T  R+   HD   I + +  G Y      +C+  +     ++
Sbjct: 75  ERLNEIYDNHSRD--QVDTPNRNLIRHDMGTIIYGLQAGQYANFVDLSCYAFVYDEYNQV 132

Query: 553 PISMTDNII 527
           P+++T+N++
Sbjct: 133 PVNLTENVL 141


>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
           anchorage protein1 protein.
          Length = 8545

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = -3

Query: 730 DNFNEVYNAMCSQSIQYSTDTRSYRHHD*NVIYFAMYNGSYPEITQSNCF-IIEMRKTRL 554
           +  NE+Y+       Q  T  R+   HD   I + +  G Y      +C+  +     ++
Sbjct: 763 ERLNEIYDNHSRD--QVDTPNRNLIRHDMGTIIYGLQAGQYANFVDLSCYAFVYDEYNQV 820

Query: 553 PISMTDNII 527
           P+++T+N++
Sbjct: 821 PVNLTENVL 829


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,554,367
Number of Sequences: 27780
Number of extensions: 310972
Number of successful extensions: 580
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)