Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0910
         (744 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g05540.1 68417.m00843 tRNA-splicing endonuclease positive eff...    29   3.3  
At2g13810.1 68415.m01524 aminotransferase class I and II family ...    28   5.7  

>At4g05540.1 68417.m00843 tRNA-splicing endonuclease positive
           effector-related contains similarity to SEN1, a positive
           effector of tRNA-splicing endonuclease [Saccharomyces
           cerevisiae] gi|172574|gb|AAB63976
          Length = 689

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/47 (29%), Positives = 28/47 (59%)
 Frame = +1

Query: 316 INMSKNIK*FYQKYLRVSKKGDNQETNHIFVNLNINISLVGTNNKKT 456
           I++ +N +  Y+KYL +S++ +NQET +I       +  +   +K+T
Sbjct: 247 IDILENAESSYKKYLLLSERKENQETKNILTAFGEFVMKMFLGSKET 293


>At2g13810.1 68415.m01524 aminotransferase class I and II family
           protein low similarity to Aromatic Aminotransferase from
           Pyrococcus horikoshii GP|14278621; contains Pfam profile
           PF00155 aminotransferase, classes I and II
          Length = 456

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 318 NVLLPQLMTNLLIPHYV*RYCEHVKELPNIQ 226
           NV L +L  N L P    R  EH+++ PN+Q
Sbjct: 41  NVNLEKLKNNYLFPEINRRELEHIEKHPNVQ 71


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,103,794
Number of Sequences: 28952
Number of extensions: 265456
Number of successful extensions: 382
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)