Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0900
         (406 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4FSG8 Cluster: Putative uncharacterized protein; n=1; ...    52   4e-06
UniRef50_Q23BZ7 Cluster: Putative uncharacterized protein; n=1; ...    32   3.8  
UniRef50_O15792 Cluster: CG2; n=89; Plasmodium falciparum|Rep: C...    31   8.7  

>UniRef50_A4FSG8 Cluster: Putative uncharacterized protein; n=1;
           Thermobia domestica|Rep: Putative uncharacterized
           protein - Thermobia domestica (firebrat)
          Length = 53

 Score = 52.0 bits (119), Expect = 4e-06
 Identities = 23/38 (60%), Positives = 30/38 (78%)
 Frame = +1

Query: 142 FFFSSNKKKSLRPRCWIKIKFKCRSLKF*SVRSLKSYI 255
           FF +S +++ LRPRCWIKI  +CRSL + SVR LKSY+
Sbjct: 15  FFENSYRQERLRPRCWIKILSRCRSLVYRSVRPLKSYM 52


>UniRef50_Q23BZ7 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 435

 Score = 32.3 bits (70), Expect = 3.8
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = +2

Query: 2   FFIILNYFVGVIKKFN*LFLIVYINK*LNDPILLIKRKNYLRDNSVIF 145
           FF+I+ +  G  K+ N LFL  YIN   N  +L   R+ ++ +N V F
Sbjct: 8   FFLIIIHIQGEAKQHNSLFL--YINPQSNSRVLFFGRRQFIFNNGVQF 53


>UniRef50_O15792 Cluster: CG2; n=89; Plasmodium falciparum|Rep: CG2 -
            Plasmodium falciparum
          Length = 2819

 Score = 31.1 bits (67), Expect = 8.7
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +1

Query: 145  FFSSNKKKSLRPRCWIKIKFKCRSLKF*SVRSLKSYISEFKPV 273
            FF + + K L  R  IK  F  RSLKF     +KSY  + K +
Sbjct: 2132 FFQTTQNKYLLNRRLIKKAFFLRSLKFDDFNDIKSYYKKVKEI 2174


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 294,742,350
Number of Sequences: 1657284
Number of extensions: 4919275
Number of successful extensions: 6407
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6405
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 17773009086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)