Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0900
         (406 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   1.7  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   7.0  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   7.0  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   7.0  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   7.0  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   7.0  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +2

Query: 221 NFDLFDH*NLTYLSSNRCEPGWFLSFNIYNIL 316
           NFD+ D      ++  RC  G  L   +Y++L
Sbjct: 594 NFDIKDKNKKVNVAGCRCVKGILLKSGLYHVL 625


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = -3

Query: 248 DFNDRTDQNFKLLHLNFIL 192
           ++N+  + N+K L+ N+I+
Sbjct: 104 NYNNNYNNNYKKLYKNYII 122


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = -3

Query: 248 DFNDRTDQNFKLLHLNFIL 192
           ++N+  + N+K L+ N+I+
Sbjct: 104 NYNNNYNNNYKKLYKNYII 122


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 343 ILSCVEFY*VLFKLVIILIYL 405
           I+  + F+ V+F  +IILI L
Sbjct: 407 IIEWLSFFIVIFTYIIILITL 427


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 393 NNY*FK*NLIKFNTTQYN 340
           NNY +  N  K+N   YN
Sbjct: 320 NNYNYNNNNYKYNYNNYN 337


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -2

Query: 399 N*NNY*FK*NLIKFNTTQYNCN 334
           N NNY +  N   +N   YN N
Sbjct: 325 NNNNYKYNYNNNNYNNNNYNNN 346


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,859
Number of Sequences: 438
Number of extensions: 1562
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)