Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0894
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces po...    29   0.90 
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    27   2.7  
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    27   2.7  
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||...    26   6.3  
SPBC14C8.13 |||SRR1 family protein|Schizosaccharomyces pombe|chr...    25   8.4  

>SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 213

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 174 VAANSPGALAGLRFGDQILEINNVT 248
           VA  SP   AGL  GD+++ + NVT
Sbjct: 135 VAVESPAQEAGLCIGDELVHVQNVT 159


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +3

Query: 579 TYDKQDVIIAFQGTGSH--TSSLNAVLLDLTSNNSYHNSLKYCAI 707
           T+DK D+I+    T  H  TSSLN V    +SN+++ +S  +  +
Sbjct: 642 TFDKADIILNRSPTSKHLSTSSLNRV---NSSNSNFQDSKSFSTL 683


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = +3

Query: 12  PTSSNVVAPLSSQSLSLPKATVTQAIRQVVLCKDRNGKCGLRLHSVDSGVFVCYVAANSP 191
           P  S  +AP +  SLS P+ T+ Q++  + L    N +  +   +  +G F   V+A+ P
Sbjct: 298 PLQSPPLAPKTGVSLSRPRLTLDQSLGNLSLGSGINQRRQVPRSNSYAGAFPSVVSASLP 357


>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 393

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 663 TSNNSYHNSLKYCAININVF 722
           T+ N YH S  YC+++  ++
Sbjct: 14  TTENDYHGSFPYCSVHAQLY 33


>SPBC14C8.13 |||SRR1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 251

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -1

Query: 362 LCVKLHFSRMAYHEQPW*YYLQELS*GYHD 273
           +C K +++R+ + E P  Y   +LS  +HD
Sbjct: 198 MCTKNYYTRLLFPEFPNVYAFNDLSFHFHD 227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,085,720
Number of Sequences: 5004
Number of extensions: 65129
Number of successful extensions: 140
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)