Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0894
         (728 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0469 - 3725117-3725170,3725282-3725356,3726938-3727015,372...    29   3.8  
05_03_0110 + 8500204-8500460,8502544-8502612,8502725-8502790,850...    29   5.0  
01_06_0290 + 28235024-28235037,28235160-28235643                       29   5.0  
01_07_0227 + 42144437-42144446,42145059-42145428,42145528-421456...    28   8.7  
01_01_0977 - 7717808-7717837,7718227-7718327,7718449-7718548,771...    28   8.7  

>05_01_0469 -
           3725117-3725170,3725282-3725356,3726938-3727015,
           3727091-3727183,3727582-3727696,3728028-3728158,
           3728243-3728512,3728983-3729120
          Length = 317

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 135 RLHSVDSGVFVCYVAANSPGALAGLRFGDQILEINNVTVA 254
           R++ + SG+ V  V+  SP    G+R GD I      +++
Sbjct: 206 RVYGISSGLIVAKVSNGSPAERNGIRMGDVIFHCQQESIS 245


>05_03_0110 +
           8500204-8500460,8502544-8502612,8502725-8502790,
           8502885-8502963,8504270-8504390,8504486-8504581,
           8505403-8505515,8505612-8505689,8507777-8507893,
           8508194-8508293,8508463-8508563,8509093-8509110
          Length = 404

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = -3

Query: 573 YTIRYYCNVYNRRTF-INNFRYFLSFMPTTFIVFISSIWWSVNKPFRAADESTTNAIIFP 397
           Y +    N+ N++ F    + YF+S       V    + WS   P RA   ST   ++FP
Sbjct: 110 YFLNVIFNILNKKIFDYFPYPYFVSVSHLLVGVLYCLVGWSFGLPKRAPINSTVLKLLFP 169


>01_06_0290 + 28235024-28235037,28235160-28235643
          Length = 165

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +2

Query: 233 DQ*CHCC*MTMDKCHDILKKAP-ANNITMAVRDR 331
           D  C  C + M+ CH +L K P  N +   +RDR
Sbjct: 47  DPLCALCSIDMEDCHHLLVKCPYTNRVWSLLRDR 80


>01_07_0227 +
           42144437-42144446,42145059-42145428,42145528-42145649,
           42145767-42145935,42146236-42146545,42146742-42146825,
           42147012-42147083,42147780-42147821,42147931-42148020,
           42148106-42148213,42148292-42148384,42148540-42148619,
           42148701-42148953,42151222-42151236
          Length = 605

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = +1

Query: 427 ICSSEWLIDRPPDTGNKHNKCRWHER*EISKIIDESPSVVNITIIPYCIYERMINKMSSS 606
           ICS  W +    D  +  +K    E   IS ++ +SP  + I  IP  I  +M+  + SS
Sbjct: 341 ICSDIWHLLGSSDMSHADSKKPVEEIKLISDVVRDSPHKIFIAGIPRVISSKMLRDIVSS 400


>01_01_0977 -
           7717808-7717837,7718227-7718327,7718449-7718548,
           7718706-7718822,7718913-7718990,7719980-7720058,
           7720184-7720249,7720373-7720441,7720890-7721188
          Length = 312

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = -3

Query: 573 YTIRYYCNVYNRRTFINNFRY--FLSFMPTTFIVFISSIWWSVNKPFRAADESTTNAIIF 400
           Y +    N+ N++ + N F Y  F+S +     V    + W+V  P RA D  +TN   +
Sbjct: 124 YFLNVIFNILNKKIY-NYFPYPYFVSVIHLLVGVVYCLVSWTVGLPKRATDMDSTNVYAY 182


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,272,448
Number of Sequences: 37544
Number of extensions: 393259
Number of successful extensions: 838
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)