BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbVf0894 (728 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 05_01_0469 - 3725117-3725170,3725282-3725356,3726938-3727015,372... 29 3.8 05_03_0110 + 8500204-8500460,8502544-8502612,8502725-8502790,850... 29 5.0 01_06_0290 + 28235024-28235037,28235160-28235643 29 5.0 01_07_0227 + 42144437-42144446,42145059-42145428,42145528-421456... 28 8.7 01_01_0977 - 7717808-7717837,7718227-7718327,7718449-7718548,771... 28 8.7 >05_01_0469 - 3725117-3725170,3725282-3725356,3726938-3727015, 3727091-3727183,3727582-3727696,3728028-3728158, 3728243-3728512,3728983-3729120 Length = 317 Score = 29.1 bits (62), Expect = 3.8 Identities = 12/40 (30%), Positives = 21/40 (52%) Frame = +3 Query: 135 RLHSVDSGVFVCYVAANSPGALAGLRFGDQILEINNVTVA 254 R++ + SG+ V V+ SP G+R GD I +++ Sbjct: 206 RVYGISSGLIVAKVSNGSPAERNGIRMGDVIFHCQQESIS 245 >05_03_0110 + 8500204-8500460,8502544-8502612,8502725-8502790, 8502885-8502963,8504270-8504390,8504486-8504581, 8505403-8505515,8505612-8505689,8507777-8507893, 8508194-8508293,8508463-8508563,8509093-8509110 Length = 404 Score = 28.7 bits (61), Expect = 5.0 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 1/60 (1%) Frame = -3 Query: 573 YTIRYYCNVYNRRTF-INNFRYFLSFMPTTFIVFISSIWWSVNKPFRAADESTTNAIIFP 397 Y + N+ N++ F + YF+S V + WS P RA ST ++FP Sbjct: 110 YFLNVIFNILNKKIFDYFPYPYFVSVSHLLVGVLYCLVGWSFGLPKRAPINSTVLKLLFP 169 >01_06_0290 + 28235024-28235037,28235160-28235643 Length = 165 Score = 28.7 bits (61), Expect = 5.0 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%) Frame = +2 Query: 233 DQ*CHCC*MTMDKCHDILKKAP-ANNITMAVRDR 331 D C C + M+ CH +L K P N + +RDR Sbjct: 47 DPLCALCSIDMEDCHHLLVKCPYTNRVWSLLRDR 80 >01_07_0227 + 42144437-42144446,42145059-42145428,42145528-42145649, 42145767-42145935,42146236-42146545,42146742-42146825, 42147012-42147083,42147780-42147821,42147931-42148020, 42148106-42148213,42148292-42148384,42148540-42148619, 42148701-42148953,42151222-42151236 Length = 605 Score = 27.9 bits (59), Expect = 8.7 Identities = 18/60 (30%), Positives = 28/60 (46%) Frame = +1 Query: 427 ICSSEWLIDRPPDTGNKHNKCRWHER*EISKIIDESPSVVNITIIPYCIYERMINKMSSS 606 ICS W + D + +K E IS ++ +SP + I IP I +M+ + SS Sbjct: 341 ICSDIWHLLGSSDMSHADSKKPVEEIKLISDVVRDSPHKIFIAGIPRVISSKMLRDIVSS 400 >01_01_0977 - 7717808-7717837,7718227-7718327,7718449-7718548, 7718706-7718822,7718913-7718990,7719980-7720058, 7720184-7720249,7720373-7720441,7720890-7721188 Length = 312 Score = 27.9 bits (59), Expect = 8.7 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%) Frame = -3 Query: 573 YTIRYYCNVYNRRTFINNFRY--FLSFMPTTFIVFISSIWWSVNKPFRAADESTTNAIIF 400 Y + N+ N++ + N F Y F+S + V + W+V P RA D +TN + Sbjct: 124 YFLNVIFNILNKKIY-NYFPYPYFVSVIHLLVGVVYCLVSWTVGLPKRATDMDSTNVYAY 182 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 19,272,448 Number of Sequences: 37544 Number of extensions: 393259 Number of successful extensions: 838 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 822 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 838 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1909952136 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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