Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0894
(728 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19067| Best HMM Match : PDZ (HMM E-Value=1.6e-12) 86 3e-17
SB_27031| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 2e-04
SB_13398| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.011
SB_44409| Best HMM Match : PDZ (HMM E-Value=7.1e-33) 37 0.015
SB_31410| Best HMM Match : PDZ (HMM E-Value=1.1e-15) 37 0.019
SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35) 36 0.025
SB_33275| Best HMM Match : PDZ (HMM E-Value=5.2e-11) 33 0.18
SB_36084| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.31
SB_12379| Best HMM Match : PDZ (HMM E-Value=4.7e-19) 29 3.9
SB_1026| Best HMM Match : PDZ (HMM E-Value=9.7e-08) 29 3.9
SB_19464| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_42356| Best HMM Match : PDZ (HMM E-Value=5.7e-19) 28 8.9
SB_36803| Best HMM Match : RhoGAP (HMM E-Value=0) 28 8.9
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_47634| Best HMM Match : Metallophos (HMM E-Value=1e-11) 28 8.9
SB_41041| Best HMM Match : PDZ (HMM E-Value=1.3e-40) 28 8.9
SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
>SB_19067| Best HMM Match : PDZ (HMM E-Value=1.6e-12)
Length = 217
Score = 85.8 bits (203), Expect = 3e-17
Identities = 39/80 (48%), Positives = 59/80 (73%), Gaps = 1/80 (1%)
Frame = +3
Query: 18 SSNVVAPLS-SQSLSLPKATVTQAIRQVVLCKDRNGKCGLRLHSVDSGVFVCYVAANSPG 194
+S +VAP++ S +L+L +A + +R+V+LCKD GK GLR+ +V+ G+FV +V +SP
Sbjct: 18 TSGIVAPVTGSNNLNLRRAEIKGGVREVILCKDNEGKLGLRVRAVNKGIFVAFVHKDSPA 77
Query: 195 ALAGLRFGDQILEINNVTVA 254
AL GLRFGDQIL+I+ +A
Sbjct: 78 ALGGLRFGDQILQIDGENMA 97
Score = 68.9 bits (161), Expect = 4e-12
Identities = 38/77 (49%), Positives = 47/77 (61%), Gaps = 4/77 (5%)
Frame = +2
Query: 266 DKCHDILKKAPANNITMAVRDRPFERNVTLHKDSLGHVGFQFKNGKIIALVVDSSAARNG 445
DK LK A + AVRDRPFER + L KDS GHVGF FKNGKI + ++SAA
Sbjct: 102 DKAMKRLKNASPQRVVFAVRDRPFERTIVLQKDSTGHVGFVFKNGKITQIAKETSAA--S 159
Query: 446 LLTDHQIL----EINTI 484
+L+ + +L EI TI
Sbjct: 160 VLSGYSLLFKDSEIKTI 176
>SB_27031| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 537
Score = 43.6 bits (98), Expect = 2e-04
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Frame = +2
Query: 257 MTMDKCHDILKKA-PANNITMAVRDRPFERNVTLHK-DSLGHVGFQFKNGKIIALVVDSS 430
+ + +C +++K + P +T+ P V +++ D+ +GF +NG I +L+ S
Sbjct: 297 LPLPECQNVIKNSRPGTKVTLKTVSCPPTVQVVVNRPDAKYQLGFSVQNGMICSLMRGSI 356
Query: 431 AARNGLLTDHQILEINTINVV 493
A R G+ H+I+EIN +VV
Sbjct: 357 AERGGVRVGHRIIEINGESVV 377
Score = 28.3 bits (60), Expect = 6.7
Identities = 18/67 (26%), Positives = 36/67 (53%)
Frame = +3
Query: 144 SVDSGVFVCYVAANSPGALAGLRFGDQILEINNVTVAE*QWINVMISLRKLLQIISPWLF 323
SV +G+ +C + S G+R G +I+EIN +V V+ S + ++ +++ +
Sbjct: 342 SVQNGM-ICSLMRGSIAERGGVRVGHRIIEINGESV-------VVTSHQHIVDLLATTIG 393
Query: 324 VIGHSRE 344
+GH +E
Sbjct: 394 EVGHKQE 400
>SB_13398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2149
Score = 37.5 bits (83), Expect = 0.011
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Frame = +3
Query: 6 VQPTSSNVVAPLSSQSLSLPKA-TVTQAIRQVVLCKDRNGKCGLRLHSVDSGVFVCYVAA 182
VQ + + + L+ +S +P A V IR L + R G+ G + VFV V
Sbjct: 52 VQALTKDQIVLLARRSTRVPPALAVISRIRTFDL-RRRRGRFGFTVRG-SGPVFVHNVEP 109
Query: 183 NSPGALAGLRFGDQILEINNVTV 251
SP G+R GD +L++N V+V
Sbjct: 110 KSPAFTVGMRTGDLVLKVNGVSV 132
Score = 29.9 bits (64), Expect = 2.2
Identities = 21/61 (34%), Positives = 30/61 (49%)
Frame = +3
Query: 159 VFVCYVAANSPGALAGLRFGDQILEINNVTVAE*QWINVMISLRKLLQIISPWLFVIGHS 338
V + V NS AGL+ GDQILE+N V +++ R+ + + P L VI
Sbjct: 22 VVIISVQDNSIAERAGLQAGDQILELNGENVQALTKDQIVLLARRSTR-VPPALAVISRI 80
Query: 339 R 341
R
Sbjct: 81 R 81
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/31 (51%), Positives = 18/31 (58%)
Frame = +3
Query: 159 VFVCYVAANSPGALAGLRFGDQILEINNVTV 251
V V V SP A A L+ GD ILEIN + V
Sbjct: 316 VCVRLVDKGSPAAQARLKPGDHILEINGLNV 346
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/31 (51%), Positives = 18/31 (58%)
Frame = +3
Query: 159 VFVCYVAANSPGALAGLRFGDQILEINNVTV 251
V V V SP A A L+ GD ILEIN + V
Sbjct: 484 VCVRSVDKGSPAAQARLKPGDHILEINGLNV 514
>SB_44409| Best HMM Match : PDZ (HMM E-Value=7.1e-33)
Length = 718
Score = 37.1 bits (82), Expect = 0.015
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +3
Query: 174 VAANSPGALAGLRFGDQILEINNVTVAE*QWINVMISLRKLLQ 302
+A SP A LR GD+ILE+N +V V++S+ K L+
Sbjct: 73 IAQGSPAERANLRIGDEILEVNGTSVENFSHAEVILSIHKCLK 115
>SB_31410| Best HMM Match : PDZ (HMM E-Value=1.1e-15)
Length = 556
Score = 36.7 bits (81), Expect = 0.019
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Frame = +3
Query: 156 GVFVCYVAANSPGALAGLRFGDQILEINNV---TVAE*QWINVMISLRKLLQII 308
GV++ V ++S GL GDQI+E+N + +A+ IN++ SL K+ +I
Sbjct: 154 GVYISQVDSDSQAEKQGLHLGDQIIEVNGIDFEQIAQNSAINLLSSLSKMKLVI 207
>SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)
Length = 1772
Score = 36.3 bits (80), Expect = 0.025
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Frame = +3
Query: 39 LSSQSLSLPKATVTQAIRQVVLCKDRNGKCGLRLHS---VDSGVFVCYVAANSPGALAGL 209
L+ ++ T QA++ V +D GK GL++ G+++ V +S + AGL
Sbjct: 1292 LAVNDVNFDGLTHDQAVKVNVFVED-GGKLGLKIRGGAEYGLGIYIAGVDEHSAASRAGL 1350
Query: 210 RFGDQILEINNVT 248
+ GDQI+++N +
Sbjct: 1351 KCGDQIMDVNGTS 1363
>SB_33275| Best HMM Match : PDZ (HMM E-Value=5.2e-11)
Length = 881
Score = 33.5 bits (73), Expect = 0.18
Identities = 21/51 (41%), Positives = 27/51 (52%)
Frame = +3
Query: 99 VLCKDRNGKCGLRLHSVDSGVFVCYVAANSPGALAGLRFGDQILEINNVTV 251
V C +G G L S V C + A+SP AGL+ GDQIL +N +V
Sbjct: 280 VSCGWASGGYGFTLSSQGPCVLSC-ILASSPAHKAGLKPGDQILYVNGSSV 329
>SB_36084| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 751
Score = 32.7 bits (71), Expect = 0.31
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +3
Query: 159 VFVCYVAANSPGALAGLRFGDQILEINNVTVAE*QWINVMISLRKLLQ 302
VFV VA N P AGL GDQI+ +N V + V+ ++K ++
Sbjct: 187 VFVRQVAPNGPADKAGLSSGDQIVSVNGNQVLNRTYSQVIELIQKSVE 234
>SB_12379| Best HMM Match : PDZ (HMM E-Value=4.7e-19)
Length = 129
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +3
Query: 114 RNGK-CGLRLHSVDS-GVFVCYVAANSPGALAGLRFGDQILEINNV 245
R GK G+++ + G+FV V +P GLR GD+IL N++
Sbjct: 38 REGKGIGIQVQGGNKHGIFVAGVREGNPAHRQGLRRGDKILMANDI 83
>SB_1026| Best HMM Match : PDZ (HMM E-Value=9.7e-08)
Length = 924
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/50 (24%), Positives = 26/50 (52%)
Frame = +3
Query: 108 KDRNGKCGLRLHSVDSGVFVCYVAANSPGALAGLRFGDQILEINNVTVAE 257
+D NG G+ + + +++ V + G++ GD+IL +N+V +
Sbjct: 661 EDNNGVIGISVTCRNDALYISQVEEGRLAHVQGVQAGDEILAVNDVNAED 710
>SB_19464| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1653
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +3
Query: 114 RNGK-CGLRLHSVDS-GVFVCYVAANSPGALAGLRFGDQILEINNV 245
R GK G+++ + G+FV V +P GLR GD+IL N++
Sbjct: 929 REGKGIGIQVQGGNKHGIFVAGVREGNPAHRQGLRRGDKILMANDI 974
>SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2437
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +3
Query: 156 GVFVCYVAANSPGALAG-LRFGDQILEINNVTV 251
G++V + N P G +R GD+ILE+N V++
Sbjct: 1280 GIYVKSLMLNGPADRNGKIRIGDRILEVNGVSL 1312
>SB_42356| Best HMM Match : PDZ (HMM E-Value=5.7e-19)
Length = 619
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 150 DSGVFVCYVAANSPGALAGLRFGDQILEINNVTV 251
++ ++V V P A GL+ GD+ILE+N + +
Sbjct: 558 ETSIYVTKVQPEGPAAF-GLKPGDKILEVNGINL 590
>SB_36803| Best HMM Match : RhoGAP (HMM E-Value=0)
Length = 1277
Score = 27.9 bits (59), Expect = 8.9
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Frame = +3
Query: 78 TQAIRQVVLCKDRNGKCGLRLHSVDS-----GVFVCYVAANSPGALAG-LRFGDQILEIN 239
TQ R V + + N G + D GVFV + S G L GD+ILE+N
Sbjct: 108 TQGTRAVEIKRTHNQPLGFFIRQGDGWGRKDGVFVSRITPGSLVDCDGSLAVGDEILEVN 167
Query: 240 NVTVA 254
V +A
Sbjct: 168 GVCLA 172
>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5222
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 295 SFLKDIMTFIHCHSATVTLLISNI*SPN 212
SF+ D++ +HCH VTLL++ PN
Sbjct: 4803 SFIVDLLA-VHCHHLPVTLLLAQKLPPN 4829
>SB_47634| Best HMM Match : Metallophos (HMM E-Value=1e-11)
Length = 585
Score = 27.9 bits (59), Expect = 8.9
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Frame = +3
Query: 111 DRNGKCGL----RLHSVDSGVFVCYVAANSPGALAGLRFGDQILEINNVTVAE*QWINVM 278
D G+CG+ R H D+G V + + N G+L + + +N T Q+ +
Sbjct: 390 DSGGECGVPMYHRFHMPDNGNHVWWYSFNY-GSLHYIMMSTE----HNFTRGSRQYKWIE 444
Query: 279 ISLRKLLQIISPWLFVIGH 335
LR + + ++PW+ + GH
Sbjct: 445 NDLRNVDRSVTPWVLIGGH 463
>SB_41041| Best HMM Match : PDZ (HMM E-Value=1.3e-40)
Length = 933
Score = 27.9 bits (59), Expect = 8.9
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +3
Query: 147 VDSGVFVCYVAANSPGALAG-LRFGDQILEINNVTVAE*QWINVMISLRKLLQ 302
+D G+FV V A G L+ DQ+L +NNV+ + LR+ +Q
Sbjct: 317 IDMGIFVKSVIAGGAAFKDGRLKAEDQLLSVNNVSFMRLTNTEAIDGLRRAMQ 369
>SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1393
Score = 27.9 bits (59), Expect = 8.9
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Frame = +3
Query: 42 SSQSLSLPKATVTQAIRQVVLCKDRNGKCGLRL-HSVDSGVFVCYVAANSPGAL---AGL 209
S SLS + +R+ ++CK + G L++ + G F+ + L
Sbjct: 6 SKSSLSRKGKHWSHHVRESIVCKSKEGSFNLKIVGGAEFGEFINIGDLKEDKVVYKKGKL 65
Query: 210 RFGDQILEINNVTVA 254
GD ILEINN VA
Sbjct: 66 LCGDVILEINNKPVA 80
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,735,027
Number of Sequences: 59808
Number of extensions: 472879
Number of successful extensions: 1074
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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