Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0894
(728 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132876-33|CAI79187.1| 1133|Caenorhabditis elegans Hypothetical... 38 0.006
AL132876-32|CAD56252.2| 1172|Caenorhabditis elegans Hypothetical... 38 0.006
Z81466-2|CAC42256.1| 954|Caenorhabditis elegans Hypothetical pr... 37 0.017
Z81466-1|CAB03869.1| 982|Caenorhabditis elegans Hypothetical pr... 37 0.017
AJ133374-1|CAB40208.1| 954|Caenorhabditis elegans lin-10 protei... 37 0.017
U21323-5|AAA62550.1| 124|Caenorhabditis elegans Hypothetical pr... 35 0.052
AJ276590-1|CAB91651.1| 679|Caenorhabditis elegans LET-413 prote... 35 0.068
AF068716-10|AAC17752.2| 679|Caenorhabditis elegans Lethal prote... 35 0.068
AF068716-9|AAT81195.1| 699|Caenorhabditis elegans Lethal protei... 35 0.068
AF040642-8|AAB94951.1| 152|Caenorhabditis elegans Hypothetical ... 34 0.12
Z81073-2|CAB03034.2| 245|Caenorhabditis elegans Hypothetical pr... 33 0.28
Z66500-11|CAC42334.1| 625|Caenorhabditis elegans Hypothetical p... 30 1.9
Z66500-10|CAB61022.1| 666|Caenorhabditis elegans Hypothetical p... 30 1.9
Z66500-9|CAA91307.1| 672|Caenorhabditis elegans Hypothetical pr... 30 1.9
AF070920-1|AAC24231.1| 554|Caenorhabditis elegans cytoplasmic s... 30 1.9
AF063244-1|AAC16434.1| 666|Caenorhabditis elegans cytoplasmic s... 30 1.9
AC024824-6|AAK85504.2| 567|Caenorhabditis elegans Hypothetical ... 29 2.6
AC024777-5|AAF60564.1| 506|Caenorhabditis elegans Hypothetical ... 29 3.4
U28741-6|AAO21428.1| 942|Caenorhabditis elegans Synapse defecti... 28 5.9
U28741-5|AAO38644.1| 987|Caenorhabditis elegans Synapse defecti... 28 5.9
AF546880-1|AAN38752.1| 942|Caenorhabditis elegans axon identity... 28 5.9
>AL132876-33|CAI79187.1| 1133|Caenorhabditis elegans Hypothetical
protein Y105E8A.26b protein.
Length = 1133
Score = 38.3 bits (85), Expect = 0.006
Identities = 19/41 (46%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = +3
Query: 120 GKCGLR-LHSVDSGVFVCYVAANSPGALAGLRFGDQILEIN 239
G G+R + + G+FV VAA+SP +L G+ GD+ILE+N
Sbjct: 342 GSVGVRVIGGNEVGIFVSAVAADSPASLHGVSCGDRILEVN 382
>AL132876-32|CAD56252.2| 1172|Caenorhabditis elegans Hypothetical
protein Y105E8A.26a protein.
Length = 1172
Score = 38.3 bits (85), Expect = 0.006
Identities = 19/41 (46%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = +3
Query: 120 GKCGLR-LHSVDSGVFVCYVAANSPGALAGLRFGDQILEIN 239
G G+R + + G+FV VAA+SP +L G+ GD+ILE+N
Sbjct: 342 GSVGVRVIGGNEVGIFVSAVAADSPASLHGVSCGDRILEVN 382
>Z81466-2|CAC42256.1| 954|Caenorhabditis elegans Hypothetical protein
C09H6.2b protein.
Length = 954
Score = 36.7 bits (81), Expect = 0.017
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +2
Query: 299 ANNITMAVRDRPFERNVTLHK-DSLGHVGFQFKNGKIIALVVDSSAARNGLLTDHQILEI 475
A + M V P V + + D+ +GF +NG I +L+ A R G+ H+I+EI
Sbjct: 849 ATAVRMTVVSTPPVVEVRIRRPDTKYQLGFSVQNGVICSLLRGGIAERGGIRVGHRIIEI 908
Query: 476 NTINVVGM 499
N +VV +
Sbjct: 909 NGTSVVAV 916
>Z81466-1|CAB03869.1| 982|Caenorhabditis elegans Hypothetical protein
C09H6.2a protein.
Length = 982
Score = 36.7 bits (81), Expect = 0.017
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +2
Query: 299 ANNITMAVRDRPFERNVTLHK-DSLGHVGFQFKNGKIIALVVDSSAARNGLLTDHQILEI 475
A + M V P V + + D+ +GF +NG I +L+ A R G+ H+I+EI
Sbjct: 877 ATAVRMTVVSTPPVVEVRIRRPDTKYQLGFSVQNGVICSLLRGGIAERGGIRVGHRIIEI 936
Query: 476 NTINVVGM 499
N +VV +
Sbjct: 937 NGTSVVAV 944
>AJ133374-1|CAB40208.1| 954|Caenorhabditis elegans lin-10 protein
protein.
Length = 954
Score = 36.7 bits (81), Expect = 0.017
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +2
Query: 299 ANNITMAVRDRPFERNVTLHK-DSLGHVGFQFKNGKIIALVVDSSAARNGLLTDHQILEI 475
A + M V P V + + D+ +GF +NG I +L+ A R G+ H+I+EI
Sbjct: 849 ATAVRMTVVSTPPVVEVRIRRPDTKYQLGFSVQNGVICSLLRGGIAERGGIRVGHRIIEI 908
Query: 476 NTINVVGM 499
N +VV +
Sbjct: 909 NGTSVVAV 916
>U21323-5|AAA62550.1| 124|Caenorhabditis elegans Hypothetical
protein C45G9.7 protein.
Length = 124
Score = 35.1 bits (77), Expect = 0.052
Identities = 15/30 (50%), Positives = 22/30 (73%)
Frame = +3
Query: 150 DSGVFVCYVAANSPGALAGLRFGDQILEIN 239
DSGV++ V + SP +AGLR D+IL++N
Sbjct: 58 DSGVYITNVESGSPADVAGLRKHDKILQVN 87
>AJ276590-1|CAB91651.1| 679|Caenorhabditis elegans LET-413 protein
protein.
Length = 679
Score = 34.7 bits (76), Expect = 0.068
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 11/86 (12%)
Frame = +3
Query: 69 ATVTQAIRQVVLCKDRNGKCGLRL-----------HSVDSGVFVCYVAANSPGALAGLRF 215
A TQ + + + KD GK GL + DSG+FV V S GLR
Sbjct: 567 AAGTQNMHTIRIQKDDTGKLGLSFAGGTSNDPAPNSNGDSGLFVTKVTPGSAAYRCGLRE 626
Query: 216 GDQILEINNVTVAE*QWINVMISLRK 293
GD+++ N+V + N M +++K
Sbjct: 627 GDKLIRANDVNMINASQDNAMEAIKK 652
>AF068716-10|AAC17752.2| 679|Caenorhabditis elegans Lethal protein
413, isoform a protein.
Length = 679
Score = 34.7 bits (76), Expect = 0.068
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 11/86 (12%)
Frame = +3
Query: 69 ATVTQAIRQVVLCKDRNGKCGLRL-----------HSVDSGVFVCYVAANSPGALAGLRF 215
A TQ + + + KD GK GL + DSG+FV V S GLR
Sbjct: 567 AAGTQNMHTIRIQKDDTGKLGLSFAGGTSNDPAPNSNGDSGLFVTKVTPGSAAYRCGLRE 626
Query: 216 GDQILEINNVTVAE*QWINVMISLRK 293
GD+++ N+V + N M +++K
Sbjct: 627 GDKLIRANDVNMINASQDNAMEAIKK 652
>AF068716-9|AAT81195.1| 699|Caenorhabditis elegans Lethal protein
413, isoform b protein.
Length = 699
Score = 34.7 bits (76), Expect = 0.068
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 11/86 (12%)
Frame = +3
Query: 69 ATVTQAIRQVVLCKDRNGKCGLRL-----------HSVDSGVFVCYVAANSPGALAGLRF 215
A TQ + + + KD GK GL + DSG+FV V S GLR
Sbjct: 560 AAGTQNMHTIRIQKDDTGKLGLSFAGGTSNDPAPNSNGDSGLFVTKVTPGSAAYRCGLRE 619
Query: 216 GDQILEINNVTVAE*QWINVMISLRK 293
GD+++ N+V + N M +++K
Sbjct: 620 GDKLIRANDVNMINASQDNAMEAIKK 645
>AF040642-8|AAB94951.1| 152|Caenorhabditis elegans Hypothetical
protein C50D2.3 protein.
Length = 152
Score = 33.9 bits (74), Expect = 0.12
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 93 QVVLCKDRNGKCGLRLHSVDSGVFVCYVAANSPGALAG-LRFGDQILEINNVTV 251
+V L + K GL + SV + VC V S +AG L++GDQI+EIN V
Sbjct: 46 KVTLMMTQGKKFGLGIVSVHQRILVCKVENES--LVAGVLKYGDQIIEINKKNV 97
>Z81073-2|CAB03034.2| 245|Caenorhabditis elegans Hypothetical
protein F30F8.3 protein.
Length = 245
Score = 32.7 bits (71), Expect = 0.28
Identities = 15/55 (27%), Positives = 30/55 (54%)
Frame = +3
Query: 141 HSVDSGVFVCYVAANSPGALAGLRFGDQILEINNVTVAE*QWINVMISLRKLLQI 305
+S + +V YV+A+SP G+ GD ++ +N +V ++ S+ + LQ+
Sbjct: 84 NSYERITYVDYVSADSPADRCGITRGDMVIAVNEKSVVTASHAEIVESIAQCLQV 138
>Z66500-11|CAC42334.1| 625|Caenorhabditis elegans Hypothetical
protein T05C12.6c protein.
Length = 625
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 129 GLRLHSVDSGVFVCYVAANSPGALAG-LRFGDQILEINNVTVAE*QWINVMISLRK 293
GL + ++D +FV +A G + GDQIL++N V+ E + SLR+
Sbjct: 238 GLSVCTIDGHIFVSEIAPEGAVEKDGRVNVGDQILQVNRVSFEELSGPQAVRSLRE 293
>Z66500-10|CAB61022.1| 666|Caenorhabditis elegans Hypothetical
protein T05C12.6b protein.
Length = 666
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 129 GLRLHSVDSGVFVCYVAANSPGALAG-LRFGDQILEINNVTVAE*QWINVMISLRK 293
GL + ++D +FV +A G + GDQIL++N V+ E + SLR+
Sbjct: 238 GLSVCTIDGHIFVSEIAPEGAVEKDGRVNVGDQILQVNRVSFEELSGPQAVRSLRE 293
>Z66500-9|CAA91307.1| 672|Caenorhabditis elegans Hypothetical
protein T05C12.6a protein.
Length = 672
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 129 GLRLHSVDSGVFVCYVAANSPGALAG-LRFGDQILEINNVTVAE*QWINVMISLRK 293
GL + ++D +FV +A G + GDQIL++N V+ E + SLR+
Sbjct: 238 GLSVCTIDGHIFVSEIAPEGAVEKDGRVNVGDQILQVNRVSFEELSGPQAVRSLRE 293
>AF070920-1|AAC24231.1| 554|Caenorhabditis elegans cytoplasmic
signalling transducer protein.
Length = 554
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 129 GLRLHSVDSGVFVCYVAANSPGALAG-LRFGDQILEINNVTVAE*QWINVMISLRK 293
GL + ++D +FV +A G + GDQIL++N V+ E + SLR+
Sbjct: 167 GLSVCTIDGHIFVSEIAPEGAVEKDGRVNVGDQILQVNRVSFEELSGPQAVRSLRE 222
>AF063244-1|AAC16434.1| 666|Caenorhabditis elegans cytoplasmic
signalling transducer protein.
Length = 666
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 129 GLRLHSVDSGVFVCYVAANSPGALAG-LRFGDQILEINNVTVAE*QWINVMISLRK 293
GL + ++D +FV +A G + GDQIL++N V+ E + SLR+
Sbjct: 238 GLSVCTIDGHIFVSEIAPEGAVEKDGRVNVGDQILQVNRVSFEELSGPQAVRSLRE 293
>AC024824-6|AAK85504.2| 567|Caenorhabditis elegans Hypothetical
protein Y55B1BR.4 protein.
Length = 567
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +3
Query: 159 VFVCYVAANSPGALAG-LRFGDQILEINNVTVAE 257
V+V + AN +G ++ GD++LE+N +TVA+
Sbjct: 151 VYVARIMANGVADRSGCIQEGDRVLEVNGITVAD 184
>AC024777-5|AAF60564.1| 506|Caenorhabditis elegans Hypothetical
protein Y42H9AR.1 protein.
Length = 506
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +3
Query: 156 GVFVCYVAANSPGALAGLR-FGDQILEINNV 245
G V V NSPGA+AGL F D I+ I N+
Sbjct: 16 GYHVLRVQENSPGAVAGLEPFFDFIVSIGNI 46
>U28741-6|AAO21428.1| 942|Caenorhabditis elegans Synapse defective
protein 1, isoformb protein.
Length = 942
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +3
Query: 156 GVFVCYVAANSPGALAG--LRFGDQILEINNVTVA 254
GVFV NS A G +R GD+IL INNV V+
Sbjct: 81 GVFVSRFGDNSELAKYGEVMRPGDEILTINNVEVS 115
>U28741-5|AAO38644.1| 987|Caenorhabditis elegans Synapse defective
protein 1, isoforma protein.
Length = 987
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +3
Query: 156 GVFVCYVAANSPGALAG--LRFGDQILEINNVTVA 254
GVFV NS A G +R GD+IL INNV V+
Sbjct: 149 GVFVSRFGDNSELAKYGEVMRPGDEILTINNVEVS 183
>AF546880-1|AAN38752.1| 942|Caenorhabditis elegans axon identity
specification proteinSYD-1 protein.
Length = 942
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +3
Query: 156 GVFVCYVAANSPGALAG--LRFGDQILEINNVTVA 254
GVFV NS A G +R GD+IL INNV V+
Sbjct: 81 GVFVSRFGDNSELAKYGEVMRPGDEILTINNVEVS 115
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,051,070
Number of Sequences: 27780
Number of extensions: 367343
Number of successful extensions: 940
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -