Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0894
         (728 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   2.2  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   2.2  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   5.2  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   9.0  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   9.0  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   9.0  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   9.0  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 21/109 (19%), Positives = 46/109 (42%), Gaps = 2/109 (1%)
 Frame = +3

Query: 21  SNVVAPLSSQSLSLPKATVTQAIRQVVLCKDRNGKCGLRLHSVDSGVFVCYVAANSPGAL 200
           S +++ + +    L +      ++ +V  +D+     +R+  V   +F  ++ A +P A 
Sbjct: 241 SRLLSSIRNHEKMLREQAKKMNVKSLVSNQDKERSAEVRIAKVAFTIFFLFLLAWTPYAT 300

Query: 201 AGLR--FGDQILEINNVTVAE*QWINVMISLRKLLQIISPWLFVIGHSR 341
             L   +G++ L     T+       +     K +  I PW++ I H R
Sbjct: 301 VALIGVYGNRELLTPVSTM-------LPAVFAKTVSCIDPWIYAINHPR 342


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 21/109 (19%), Positives = 46/109 (42%), Gaps = 2/109 (1%)
 Frame = +3

Query: 21  SNVVAPLSSQSLSLPKATVTQAIRQVVLCKDRNGKCGLRLHSVDSGVFVCYVAANSPGAL 200
           S +++ + +    L +      ++ +V  +D+     +R+  V   +F  ++ A +P A 
Sbjct: 241 SRLLSSIRNHEKMLREQAKKMNVKSLVSNQDKERSAEVRIAKVAFTIFFLFLLAWTPYAT 300

Query: 201 AGLR--FGDQILEINNVTVAE*QWINVMISLRKLLQIISPWLFVIGHSR 341
             L   +G++ L     T+       +     K +  I PW++ I H R
Sbjct: 301 VALIGVYGNRELLTPVSTM-------LPAVFAKTVSCIDPWIYAINHPR 342


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 621 GSHTSSLNAVLLDLTSNNSYHNSLKYCAINI 713
           G HT     V    T +N  +N L+  AIN+
Sbjct: 68  GIHTGESIVVAPSQTLSNKEYNMLRTTAINV 98


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 666 SNNSYHNSLKYCAININ 716
           +NN+Y+N+ K    NIN
Sbjct: 101 NNNNYNNNCKKLYYNIN 117


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 666 SNNSYHNSLKYCAININ 716
           +NN+Y+N+ K    NIN
Sbjct: 101 NNNNYNNNCKKLYYNIN 117


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 666 SNNSYHNSLKYCAININ 716
           +NN+Y+N+ K    NIN
Sbjct: 101 NNNNYNNNCKKLYYNIN 117


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 666 SNNSYHNSLKYCAININ 716
           +NN+Y+N+ K    NIN
Sbjct: 101 NNNNYNNNCKKLYYNIN 117


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,715
Number of Sequences: 438
Number of extensions: 4566
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)