Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0894
         (728 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g08840.1 68414.m00984 DNA replication helicase, putative simi...    28   5.5  
At5g57950.1 68418.m07251 26S proteasome regulatory subunit, puta...    28   7.3  

>At1g08840.1 68414.m00984 DNA replication helicase, putative similar
           to helicase [Xenopus laevis] gi|18845092|gb|AAL79550
          Length = 1296

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/37 (35%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
 Frame = +3

Query: 588 KQDVIIAFQGTGSHTSS-LNAVLLDLTSNNSYHNSLK 695
           ++D+       GSH++S L++++LD+T+   +HNS K
Sbjct: 693 RKDIAHPHGSKGSHSASYLSSMVLDVTNGFQHHNSHK 729


>At5g57950.1 68418.m07251 26S proteasome regulatory subunit,
           putative contains similarity to 26S proteasome
           non-ATPase subunit 9 SP:O00233 from [Homo sapiens]
          Length = 227

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 183 NSPGALAGLRFGDQILEINNV 245
           +SP A  GL+ GDQ+L+  NV
Sbjct: 152 SSPAAEGGLQLGDQVLKFGNV 172


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,928,504
Number of Sequences: 28952
Number of extensions: 332958
Number of successful extensions: 761
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)