Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0892
         (672 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4FSG8 Cluster: Putative uncharacterized protein; n=1; ...    51   2e-05
UniRef50_Q48574 Cluster: ORFC; n=2; Leptospira interrogans|Rep: ...    33   8.3  

>UniRef50_A4FSG8 Cluster: Putative uncharacterized protein; n=1;
           Thermobia domestica|Rep: Putative uncharacterized
           protein - Thermobia domestica (firebrat)
          Length = 53

 Score = 51.2 bits (117), Expect = 2e-05
 Identities = 22/33 (66%), Positives = 28/33 (84%)
 Frame = -3

Query: 109 LIKRKNYLRDNSVIFFFSSNKKKSLRPRCWIKI 11
           +I R +YLRDNSVIFF +S +++ LRPRCWIKI
Sbjct: 1   MIVRLSYLRDNSVIFFENSYRQERLRPRCWIKI 33


>UniRef50_Q48574 Cluster: ORFC; n=2; Leptospira interrogans|Rep:
           ORFC - Leptospira interrogans serovar
           Icterohaemorrhagiae
          Length = 85

 Score = 32.7 bits (71), Expect = 8.3
 Identities = 13/43 (30%), Positives = 26/43 (60%)
 Frame = -3

Query: 151 LIVYINK*LNDPILLIKRKNYLRDNSVIFFFSSNKKKSLRPRC 23
           + VY NK L D  ++++   + + N + F FS N++++ + RC
Sbjct: 5   ICVYYNKLLYDQKVILRLLEFYKSNYIPFLFSENQRRTRQLRC 47


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 367,618,103
Number of Sequences: 1657284
Number of extensions: 5062897
Number of successful extensions: 8217
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8215
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51652897375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)