Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0886
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    30   0.39 
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    27   3.7  
SPBP35G2.07 |ilv1||acetolactate synthase catalytic subunit|Schiz...    27   3.7  
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.4  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    26   6.4  
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ...    25   8.5  

>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 361 CLRCWGKSGNWNSWR 317
           C+ CWG++G W  W+
Sbjct: 340 CVVCWGRTGGWRLWK 354


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 391 LNAYYYYFHSHLPFWWNSGKYGAFK 465
           LN Y  YF +H P      K+G+FK
Sbjct: 119 LNKYASYFQAHEPTLQKLAKFGSFK 143


>SPBP35G2.07 |ilv1||acetolactate synthase catalytic
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 669

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 517 TTWSVLPMDWVKSLSFPGTRLFELATSRLSTPFIIHLPKE 636
           T W+V+  D V  L       FE+ATS    P ++ LPK+
Sbjct: 209 TKWNVMVKD-VADLPRRIDEAFEIATSGRPGPVLVDLPKD 247


>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +3

Query: 507 VARYYMERLTNGLGKIPEFSWYSPLRTGYLPPFNSFYYPFAQRSNDYELHTE 662
           ++ YY      G+ + P     S +   ++P  ++ Y P A   NDYEL  E
Sbjct: 488 ISPYYPTSSVYGVYESPPHMSDSRISRQHMPLTHTTYEPSAPYYNDYELAEE 539


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 622 HLPKEAMTTSCTPRRTTKKFASSTFMRRHSSNTSS 726
           H P++ +  +  P  T  K   STF+R HSS+T S
Sbjct: 390 HRPRKNINFTPLPPSTPSK--PSTFVRPHSSSTDS 422


>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +1

Query: 274 YNYGIIKENEQFVMYANYSNSLTYPNNEDRIAYLTEDV--GLNAYYY 408
           YN+     N++   +   ++  T  N +++  YLT DV  G + YYY
Sbjct: 233 YNFNFSAPNKRMQRFT--ASEATTVNGQNQSVYLTYDVPYGRSLYYY 277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,102,211
Number of Sequences: 5004
Number of extensions: 66325
Number of successful extensions: 205
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)