Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0886
         (736 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58287| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_4607| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.8  
SB_4670| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.0  
SB_453| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.1e-08)           28   9.0  

>SB_58287| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1021

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 6   PYTECGWTITGPAGEILNVSTKQHATPES 92
           P+T CG    GP+GE  ++  ++  TP S
Sbjct: 241 PHTTCGAVTEGPSGEQSHIVPERRTTPGS 269


>SB_4607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 57

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 639 NDYELHTEKNYEEIRFLDIYEK 704
           +DYEL T  NYE +R ++ YE+
Sbjct: 2   HDYELCTTMNYERLRTMNDYER 23


>SB_4670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1012

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/26 (38%), Positives = 20/26 (76%)
 Frame = +1

Query: 655 TPRRTTKKFASSTFMRRHSSNTSSKV 732
           TPRR T++F+++T +   +SNT+ ++
Sbjct: 531 TPRRLTQRFSTATTLLAQTSNTTKEL 556


>SB_453| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.1e-08)
          Length = 362

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = +1

Query: 313 MYANYSNSLTYPNNEDRIAYLTEDVGLNAYYYYFHSHLPFWWNSGKYGAFK 465
           + ANYS ++     +D    +  D+ LN     + +     WN  KYG  K
Sbjct: 246 LLANYSRNIIPQKYKDIPIKIKFDIALNQIIDLYWTDFRLRWNHTKYGGIK 296


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,499,460
Number of Sequences: 59808
Number of extensions: 456449
Number of successful extensions: 1123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1120
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)