Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0886
(736 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82260-2|CAB05130.1| 344|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z46787-14|CAA86751.1| 1186|Caenorhabditis elegans Hypothetical p... 29 3.4
Z36238-11|CAA85280.1| 1186|Caenorhabditis elegans Hypothetical p... 29 3.4
U80023-3|AAG24039.1| 324|Caenorhabditis elegans Serpentine rece... 29 3.4
Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical pr... 29 4.5
M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein ( C.ele... 29 4.5
AY037802-1|AAK94767.1| 669|Caenorhabditis elegans GLY-2 protein. 28 6.0
AY037800-1|AAK94765.1| 661|Caenorhabditis elegans GLY-2 protein. 28 6.0
AF154122-1|AAF74523.1| 669|Caenorhabditis elegans N-acetylgluco... 28 6.0
AC006625-9|AAK68273.1| 669|Caenorhabditis elegans Glycosylation... 28 6.0
>Z82260-2|CAB05130.1| 344|Caenorhabditis elegans Hypothetical
protein C32H11.3 protein.
Length = 344
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 197 YFVNMEVKNKMDYVKMMDGSLTRKYVIITELS 292
Y +N+E NK+D + + D TR Y +L+
Sbjct: 218 YVINLEASNKLDTLLIQDAQYTRDYADYVQLN 249
>Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical
protein C33B4.3b protein.
Length = 993
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1
Query: 622 HLPKEAMTTSCTPRRTTKKFASSTFMRRHSSNTSS 726
H PK ++ TP+ +T++ SST RR S + SS
Sbjct: 335 HNPKSSVPYRGTPQYSTRRRLSSTITRRRSMSQSS 369
>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
protein C33B4.3a protein.
Length = 1110
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1
Query: 622 HLPKEAMTTSCTPRRTTKKFASSTFMRRHSSNTSS 726
H PK ++ TP+ +T++ SST RR S + SS
Sbjct: 335 HNPKSSVPYRGTPQYSTRRRLSSTITRRRSMSQSS 369
>Z46787-14|CAA86751.1| 1186|Caenorhabditis elegans Hypothetical
protein R74.1 protein.
Length = 1186
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 624 FAQRSNDYELHTEKNYEEIRFLDIYEKTFFQY 719
FA N TE+NYE F D + FF+Y
Sbjct: 800 FANEMNSLIAATEQNYEATNFKDALKTGFFEY 831
>Z36238-11|CAA85280.1| 1186|Caenorhabditis elegans Hypothetical
protein R74.1 protein.
Length = 1186
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 624 FAQRSNDYELHTEKNYEEIRFLDIYEKTFFQY 719
FA N TE+NYE F D + FF+Y
Sbjct: 800 FANEMNSLIAATEQNYEATNFKDALKTGFFEY 831
>U80023-3|AAG24039.1| 324|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 30 protein.
Length = 324
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -1
Query: 514 RATVVGRRRSRFPHDVP*KLRIYQSSTRTVSVSGNSNNKHL 392
R ++G+++ PH P +S+TRT S+S +N+ HL
Sbjct: 282 RNVIIGKKKQPKPH--PEMCGPIRSNTRTTSISVTNNSSHL 320
>Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical
protein R107.8 protein.
Length = 1429
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +2
Query: 218 KNKMDYVKMMDGSLTRKYVIITELSKKTNNS 310
+++MD VKM + LT ++V+ T +S+K S
Sbjct: 808 ESEMDRVKMNERQLTEQHVLSTSISRKIKRS 838
>M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein (
C.elegans homeotic lin-12 protein gene, complete cds. ).
Length = 1429
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +2
Query: 218 KNKMDYVKMMDGSLTRKYVIITELSKKTNNS 310
+++MD VKM + LT ++V+ T +S+K S
Sbjct: 808 ESEMDRVKMNERQLTEQHVLSTSISRKIKRS 838
>AY037802-1|AAK94767.1| 669|Caenorhabditis elegans GLY-2 protein.
Length = 669
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 585 TGYLPPFNSFYYPFAQRSNDYELHTEKNY 671
+ ++ P FYY + S Y +EKNY
Sbjct: 15 SAFITPLGFFYYTISNESKRYSEESEKNY 43
>AY037800-1|AAK94765.1| 661|Caenorhabditis elegans GLY-2 protein.
Length = 661
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 585 TGYLPPFNSFYYPFAQRSNDYELHTEKNY 671
+ ++ P FYY + S Y +EKNY
Sbjct: 7 SAFITPLGFFYYTISNESKRYSEESEKNY 35
>AF154122-1|AAF74523.1| 669|Caenorhabditis elegans
N-acetylglucosaminyltransferase V protein.
Length = 669
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 585 TGYLPPFNSFYYPFAQRSNDYELHTEKNY 671
+ ++ P FYY + S Y +EKNY
Sbjct: 15 SAFITPLGFFYYTISNESKRYSEESEKNY 43
>AC006625-9|AAK68273.1| 669|Caenorhabditis elegans Glycosylation
related protein 2 protein.
Length = 669
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 585 TGYLPPFNSFYYPFAQRSNDYELHTEKNY 671
+ ++ P FYY + S Y +EKNY
Sbjct: 15 SAFITPLGFFYYTISNESKRYSEESEKNY 43
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,850,665
Number of Sequences: 27780
Number of extensions: 358615
Number of successful extensions: 980
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -