Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0886
         (736 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17620.1 68417.m02636 glycine-rich protein                          31   0.60 
At3g02280.1 68416.m00209 flavodoxin family protein low similarit...    30   1.4  
At1g01280.1 68414.m00044 cytochrome P450 family protein similar ...    30   1.8  
At4g38990.1 68417.m05524 glycosyl hydrolase family 9 protein end...    29   4.2  
At5g49850.1 68418.m06173 jacalin lectin family protein similar t...    28   7.4  
At5g13960.1 68418.m01632 SET domain-containing protein (SUVH4) i...    28   7.4  
At4g37190.1 68417.m05265 expressed protein                             27   9.8  
At4g17300.1 68417.m02598 asparaginyl-tRNA synthetase, chloroplas...    27   9.8  
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t...    27   9.8  

>At4g17620.1 68417.m02636 glycine-rich protein
          Length = 544

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +1

Query: 253 FLDEKICYNYGIIKENEQFVM 315
           F DE +C+ YG +KENE +++
Sbjct: 485 FADEVLCWLYGTVKENEDYIL 505


>At3g02280.1 68416.m00209 flavodoxin family protein low similarity
           to SP|Q05001 NADPH-cytochrome P450 reductase (EC
           1.6.2.4) {Catharanthus roseus}, similar to
           NADPH-dependent FMN and FAD containing oxidoreductase
           [Homo sapiens] GI:6694369; contains Pfam profiles
           PF00258: flavodoxin, PF00667: FAD binding domain,
           PF00175: Oxidoreductase NAD-binding domain
          Length = 623

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +1

Query: 532 LPMDWVKSLSFP-GTRLFELATSRLSTPFIIHLPKEAMTTSCTPRRTTKKFASS 690
           +P DW+  L  P   R F +++S L+ P  +HL    ++     +RT K   SS
Sbjct: 384 IPFDWLVQLVPPLKPRAFSISSSPLAHPAAVHLTVSIVSWITPYKRTRKGLCSS 437


>At1g01280.1 68414.m00044 cytochrome P450 family protein similar to
           cytochrome P450 GB:BAA92894 GI:7339658 from [ Petunia
           hybrida]
          Length = 510

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -1

Query: 112 EHSLVHVDSGVACCFVETFKISPAGPVIVQPHSV 11
           E  LVH++  + C   ETF++ PAGP ++   SV
Sbjct: 349 ESDLVHLNY-LRCVVRETFRMHPAGPFLIPHESV 381


>At4g38990.1 68417.m05524 glycosyl hydrolase family 9 protein
           endo-1,4-beta-glucanase precursor - Fragariax ananassa,
           PID:g3549291 A short intron was annotated between exons
           4 and 5 to circumvent a frameshift.   The frameshift may
           be artificial due to a sequencing error, or
           alternatively is genuine suggesting a truncated protein
           or pseudogene.
          Length = 495

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 483 LLLLLPTTVARYYMERLTNGLGKIPEFSWYSPLRTGYLP 599
           LL+LLPTT++  Y + LT  +       ++   R+GYLP
Sbjct: 12  LLILLPTTISHDYSDALTKSI------LFFEGQRSGYLP 44


>At5g49850.1 68418.m06173 jacalin lectin family protein similar to
           myrosinase-binding protein homolog [Arabidopsis
           thaliana] GI:2997767; contains Pfam profile PF01419
           jacalin-like lectin domain
          Length = 596

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +3

Query: 534 TNGLGKIPEFSWYSPLRTGYLPPFNSFYYP 623
           + G   +    WY+PL  GY+    + +YP
Sbjct: 410 SKGCAVVGFHGWYAPLGAGYITALGAHFYP 439


>At5g13960.1 68418.m01632 SET domain-containing protein (SUVH4)
           identical to SUVH4 [Arabidopsis thaliana] GI:13517749;
           contains Pfam profiles PF00856: SET domain, PF05033:
           Pre-SET motif, PF02182: YDG/SRA domain; identical to
           cDNA SUVH4 (SUVH4) GI:13517748
          Length = 624

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -1

Query: 466 P*KLRIYQSSTRTVSVSGNSNNKHLGQHLQLSKQFCLRCWGK 341
           P KL   Q   + +SVS N  + +L  HL+++K  CLR + K
Sbjct: 75  PPKLTAMQKGKQKLSVSLNGKDVNLEPHLKVTK--CLRLFNK 114


>At4g37190.1 68417.m05265 expressed protein
          Length = 562

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -2

Query: 732 DLAGGIGRMSSHKCRGSEFLRSSSRCATRSHCFFGQMDNKRS 607
           +L G +G MSS   RG+ +   SS  +  S  +FG +D +RS
Sbjct: 71  NLKGALGTMSS---RGTLYNEGSSSRSDSSATWFGDVDTQRS 109


>At4g17300.1 68417.m02598 asparaginyl-tRNA synthetase, chloroplast,
           mitochondrial / asparagine-tRNA ligase / AsnRS (SYNO)
           nearly identical to SP|O48593
          Length = 567

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 555 PEFSWYSPLRTGYLPPFNSF 614
           P +S + PLR   LPPF++F
Sbjct: 30  PSYSLFRPLRRRVLPPFDAF 49


>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
           Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
           protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
           like factor 3 [Homo sapiens] GI:12746392; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 439

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 510 ARYYMERLTNGLGKIPEFSWYSPLRTGYLPPFNSF-YYP 623
           A+ ++ RL NG    P  S +  L  GY+PP+N + Y+P
Sbjct: 198 AQSHIARLGNGDPTNP--SLFGALPMGYVPPYNGYGYHP 234


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,863,905
Number of Sequences: 28952
Number of extensions: 331930
Number of successful extensions: 890
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)