Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0885
         (721 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    30   0.022
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    30   0.022
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    23   3.3  

>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 29.9 bits (64), Expect = 0.022
 Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
 Frame = +3

Query: 306 FFKTHVMARR--LCNAVQR-NCLTKNVTTSSCRKVKEEVSKLLALKAQLVTEDAGPQKFT 476
           FFK  +   R  +C A    +C+      + CR  + +  + + +    V  + GP+  T
Sbjct: 61  FFKRSIRRNRQYVCKAKDEGSCIIDKTHRNQCRACRLKKCQNVGMNKDAVQHERGPRNST 120

Query: 477 LKTPKGTRDYNHSK 518
           L+  + +  YN S+
Sbjct: 121 LRRQQMSSYYNESR 134


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 29.9 bits (64), Expect = 0.022
 Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
 Frame = +3

Query: 306 FFKTHVMARR--LCNAVQR-NCLTKNVTTSSCRKVKEEVSKLLALKAQLVTEDAGPQKFT 476
           FFK  +   R  +C A    +C+      + CR  + +  + + +    V  + GP+  T
Sbjct: 61  FFKRSIRRNRQYVCKAKDEGSCIIDKTHRNQCRACRLKKCQNVGMNKDAVQHERGPRNST 120

Query: 477 LKTPKGTRDYNHSK 518
           L+  + +  YN S+
Sbjct: 121 LRRQQMSSYYNESR 134


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = -1

Query: 592 CINTLSSVSPKNCNNFIQYIITYCHLLW 509
           C+ T  SV    C + ++Y   Y H  +
Sbjct: 136 CVQTEKSVFDFLCRHTVEYFQNYIHFFY 163


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,380
Number of Sequences: 336
Number of extensions: 3849
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19155320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)