Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0885
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch...    88   1e-18
SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar...    27   2.7  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    26   4.7  
SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   8.2  

>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 538

 Score = 88.2 bits (209), Expect = 1e-18
 Identities = 40/90 (44%), Positives = 58/90 (64%)
 Frame = +2

Query: 413 IKVVGFKGSTCNRRCRPTKVYS*NTKGNKRLQPQQMTIRNNVLDKIITVFRRHGAECIDT 592
           +K +   GS  + + + T       KG K    + + +R ++   +  +F+RHG   +DT
Sbjct: 42  LKNLKLGGSEVSGKKKDTSFTLKTPKGTKDWCDKDVVLREHIFSTVTEIFKRHGGVTLDT 101

Query: 593 PVFELKDVLTGKYGEDSKLIYDLKDQGGEI 682
           PVFELK++L+GKYGEDSKLIYDLKDQGGE+
Sbjct: 102 PVFELKEILSGKYGEDSKLIYDLKDQGGEL 131



 Score = 28.7 bits (61), Expect = 0.88
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +3

Query: 129 MADSQEDLLLKIQEQGDLVRKLKAAKDSNE 218
           MADS  D+  +I  QG+LVR LK+   S E
Sbjct: 1   MADSLVDINERITSQGNLVRSLKSQGASKE 30


>SPAC824.08 |gda1|gdp1|guanosine-diphosphatase
           Gda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 556

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 645 FESSPYFPVSTSFSSKTGVS 586
           F   P FPV+TS  +KT VS
Sbjct: 78  FSEEPLFPVTTSIPTKTAVS 97


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -3

Query: 275 ISLYLTPNDIFITRPFLVPLIGILRCF*FSNK 180
           IS  +    +FI+ PFLV LI  L  F  S+K
Sbjct: 848 ISSIVMEYKVFISEPFLVQLISTLNLFITSSK 879


>SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 277

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 690 MKGISPPWSFKSYINFESS 634
           M+GI   W+ K+Y+N +S+
Sbjct: 9   MQGIDDGWNLKNYLNIQST 27


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,979,296
Number of Sequences: 5004
Number of extensions: 62813
Number of successful extensions: 145
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)