Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0885
(721 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0366 - 2867953-2868252,2868329-2868469,2868808-2869089,286... 84 1e-16
01_01_0724 - 5662323-5662536,5662891-5662952,5663037-5663252,566... 30 1.6
11_08_0040 + 27891797-27891823,27891934-27892091,27892169-278924... 29 3.7
07_03_0124 - 13723597-13724657,13726179-13726413 29 3.7
07_03_0521 + 19016824-19017000,19017064-19017099,19017860-190186... 28 8.6
05_05_0046 - 21834942-21835055,21835145-21835220,21835297-218355... 28 8.6
04_03_0541 - 16934460-16934573,16934663-16934738,16934815-169350... 28 8.6
02_05_0443 - 29057427-29057769,29058086-29058147,29070863-29071132 28 8.6
01_06_1351 - 36510599-36510712,36510802-36510877,36510954-365112... 28 8.6
>05_01_0366 -
2867953-2868252,2868329-2868469,2868808-2869089,
2869177-2869569,2869796-2869975,2870149-2871510
Length = 885
Score = 83.8 bits (198), Expect = 1e-16
Identities = 38/65 (58%), Positives = 46/65 (70%)
Frame = +2
Query: 488 KGNKRLQPQQMTIRNNVLDKIITVFRRHGAECIDTPVFELKDVLTGKYGEDSKLIYDLKD 667
KG + +QM IR + I VF+ HGA +DTPVFEL++ L GKYGEDSKLIYDL D
Sbjct: 454 KGTRDFGKEQMAIREHAFSIITGVFKMHGAVSLDTPVFELRETLMGKYGEDSKLIYDLAD 513
Query: 668 QGGEI 682
QGGE+
Sbjct: 514 QGGEL 518
>01_01_0724 -
5662323-5662536,5662891-5662952,5663037-5663252,
5664521-5664815,5665808-5665903,5667381-5667540,
5667837-5667903
Length = 369
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = -2
Query: 696 ILMKGISPPWSFKSYINFESSPYFPVSTSFSSKTGVSIHSAPCLLK 559
+++ G+SPPWS ++ ++ S P S S V+ H PCLLK
Sbjct: 3 VVVDGVSPPWSKEAVVHLLSEFSSPDHVSIS----VTAHQ-PCLLK 43
>11_08_0040 +
27891797-27891823,27891934-27892091,27892169-27892463,
27892548-27892607,27892686-27893036
Length = 296
Score = 29.1 bits (62), Expect = 3.7
Identities = 21/69 (30%), Positives = 30/69 (43%)
Frame = +2
Query: 455 CRPTKVYS*NTKGNKRLQPQQMTIRNNVLDKIITVFRRHGAECIDTPVFELKDVLTGKYG 634
CR Y NT RL+ Q I ++ T+F ++TPV L ++L GK
Sbjct: 49 CRNCNKYPENTTPRYRLRLQ---ISDHTTSTSCTIFDDVAQSMLETPVSSLLNLLDGKND 105
Query: 635 EDSKLIYDL 661
E +I L
Sbjct: 106 EIPNIIQQL 114
>07_03_0124 - 13723597-13724657,13726179-13726413
Length = 431
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/29 (41%), Positives = 23/29 (79%), Gaps = 1/29 (3%)
Frame = -3
Query: 548 FYPIHYYVLSFAVV-VVSCSLWCFKSKLL 465
FYP+ + + SFAVV ++S +++CF+++ L
Sbjct: 227 FYPLMWIMTSFAVVPILSGTMFCFQTQYL 255
>07_03_0521 +
19016824-19017000,19017064-19017099,19017860-19018624,
19018772-19018864,19018944-19019114,19019206-19019397,
19019443-19019530,19019617-19019685,19019841-19020054,
19020136-19020334,19020406-19020504,19020594-19020850,
19020927-19021002,19021091-19021204
Length = 849
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 296 ITYIF*NPCNGKTIMQCSSEKLSDKK 373
+ +F PC+G+ I+ CS ++L KK
Sbjct: 185 VNAVFGLPCSGQLIIPCSQDELDGKK 210
>05_05_0046 -
21834942-21835055,21835145-21835220,21835297-21835553,
21835643-21835741,21835820-21836018,21836102-21836315,
21836470-21836538,21836626-21836950,21837065-21837235,
21837315-21837479,21837555-21838191,21838258-21838319,
21838581-21838652,21839256-21839291,21839361-21839489
Length = 874
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 296 ITYIF*NPCNGKTIMQCSSEKLSDKK 373
+ +F PC+G+ I+ CS ++L KK
Sbjct: 171 VNAVFGLPCSGQPIIPCSQDELDGKK 196
>04_03_0541 -
16934460-16934573,16934663-16934738,16934815-16935071,
16935161-16935259,16935338-16935536,16935620-16935833,
16935988-16936056,16936144-16936468,16936583-16936753,
16936833-16936997,16937073-16937709,16937776-16937837,
16938098-16938169,16938689-16938724,16938794-16938922
Length = 874
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 296 ITYIF*NPCNGKTIMQCSSEKLSDKK 373
+ +F PC+G+ I+ CS ++L KK
Sbjct: 171 VNAVFGLPCSGQPIIPCSQDELDGKK 196
>02_05_0443 - 29057427-29057769,29058086-29058147,29070863-29071132
Length = 224
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 296 ITYIF*NPCNGKTIMQCSSEKLSDKK 373
+ +F PC+G+ I+ CS ++L KK
Sbjct: 149 VNAVFSLPCSGQPIIPCSQDELDGKK 174
>01_06_1351 -
36510599-36510712,36510802-36510877,36510954-36511210,
36511300-36511398,36511477-36511675,36511759-36511972,
36512127-36512195,36512283-36512607,36512722-36512892,
36512972-36513136,36513212-36513848,36513915-36513976,
36514237-36514308,36514912-36514947,36515017-36515145
Length = 874
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 296 ITYIF*NPCNGKTIMQCSSEKLSDKK 373
+ +F PC+G+ I+ CS ++L KK
Sbjct: 171 VNAVFGLPCSGQPIIPCSQDELDGKK 196
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,703,731
Number of Sequences: 37544
Number of extensions: 343573
Number of successful extensions: 721
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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