Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0885
         (721 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13244| Best HMM Match : HGTP_anticodon (HMM E-Value=1e-21)          49   4e-06
SB_30809| Best HMM Match : Mab-21 (HMM E-Value=0)                      28   6.6  
SB_26060| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_34511| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_13244| Best HMM Match : HGTP_anticodon (HMM E-Value=1e-21)
          Length = 518

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 21/41 (51%), Positives = 26/41 (63%)
 Frame = +2

Query: 488 KGNKRLQPQQMTIRNNVLDKIITVFRRHGAECIDTPVFELK 610
           KG +   P+QM +R    + I+  F RHGA  IDTPVFELK
Sbjct: 82  KGTRDYMPKQMAVRQRAFEVIVGAFERHGAVQIDTPVFELK 122



 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 26/52 (50%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
 Frame = +3

Query: 354 RNCLTKNVTTSSCRKVKEEVSKLLALKAQLVTEDAGP-QKFTLKTPKGTRDY 506
           +N +  N       ++KEE SKL+ LK +L   D G  QKF LKTPKGTRDY
Sbjct: 38  KNKIIINFLCVDISQIKEETSKLVELKKEL--GDGGKTQKFVLKTPKGTRDY 87


>SB_30809| Best HMM Match : Mab-21 (HMM E-Value=0)
          Length = 1710

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = -3

Query: 527  VLSFAVVVVSCSLWCFKSKLLWACIFCYKLSL*SQQL*YFFFNLATR*CCNIFC 366
            V+SF      C++   K+ +L  CIFC+++             +A R CCN+FC
Sbjct: 1609 VISFLWRPDVCAISEHKAFILSGCIFCHRI-----------HRIAGRSCCNLFC 1651


>SB_26060| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2671

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/23 (60%), Positives = 17/23 (73%)
 Frame = +2

Query: 554  TVFRRHGAECIDTPVFELKDVLT 622
            TV R  G E +DTPV+E +DVLT
Sbjct: 2227 TVARDAGKE-VDTPVYESRDVLT 2248



 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/23 (60%), Positives = 17/23 (73%)
 Frame = +2

Query: 554  TVFRRHGAECIDTPVFELKDVLT 622
            TV R  G E +DTPV+E +DVLT
Sbjct: 2280 TVARDAGKE-VDTPVYESRDVLT 2301


>SB_34511| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2492

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = +2

Query: 281 KHVTQITYIF*NPCNGKTIMQCSSEKLSDKKCYNIILSQG*RRSIKVVGFKGST 442
           +HV  +  +F NPC+  T      EK+    C  I+   G    ++V  ++ ST
Sbjct: 558 QHVFIVIRVF-NPCSDNTYYSKKKEKIHPPICPEIVCRGGLAWHVQVEDYRNST 610


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,305,429
Number of Sequences: 59808
Number of extensions: 431831
Number of successful extensions: 999
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)